View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14704_low_28 (Length: 212)
Name: NF14704_low_28
Description: NF14704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14704_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 15348773 - 15348583
Alignment:
| Q |
1 |
tagaggtttgaataatagttcaaaagtacaaagcctctacatgaaccttcaatttcaaaatcagaatgattttgtggatgtagaaaatcaacattgagtg |
100 |
Q |
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| T |
15348773 |
tagaggattgaataatagttcaaaagtacaaagcctctacatgaacctttaatttcaaaatcagaatgattttgtggatgtagaaaatcaacattgagtg |
15348674 |
T |
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| Q |
101 |
aagcagaagtagaatcatcatcaagcgatgttgctaaatctatagaatgaggtagatgacctatgcacaaaattctacgagtctgtgttgc |
191 |
Q |
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| T |
15348673 |
aagcagaagtagaataatcatcaagcgatgctgctaaatctatagaatgaggtagatgacctatgcacaaaattctacgagtgtgtgttgc |
15348583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 30 - 152
Target Start/End: Complemental strand, 48870424 - 48870302
Alignment:
| Q |
30 |
aaagcctctacatgaaccttcaatttcaaaatcagaatgattttgtggatgtagaaaatcaacattgagtgaagcagaagtagaatcatcatcaagcgat |
129 |
Q |
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| T |
48870424 |
aaagcctctacatgaacctttaatttcaaaatcataataagattcaggaagcagaaaatcaagattgactgaagaagagatagaatcataagcaagcgat |
48870325 |
T |
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| Q |
130 |
gttgctaaatctatagaatgagg |
152 |
Q |
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| T |
48870324 |
gcttctaaatctatagaacgagg |
48870302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 30 - 152
Target Start/End: Complemental strand, 48886110 - 48885988
Alignment:
| Q |
30 |
aaagcctctacatgaaccttcaatttcaaaatcagaatgattttgtggatgtagaaaatcaacattgagtgaagcagaagtagaatcatcatcaagcgat |
129 |
Q |
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| T |
48886110 |
aaagcctctacatgaacctttaatttcaaaatcataataagattcaggaagcagaaaatcaagattgactgaagaagagatagaatcataagcaagcgat |
48886011 |
T |
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| Q |
130 |
gttgctaaatctatagaatgagg |
152 |
Q |
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| | |||||||||||||| |||| |
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| T |
48886010 |
gcttctaaatctatagaacgagg |
48885988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 45366402 - 45366489
Alignment:
| Q |
21 |
caaaagtacaaagcctctacatgaaccttcaatttcaaaatcagaatgattttgtggatgtagaaaatcaacattgagtgaagcagaa |
108 |
Q |
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| T |
45366402 |
caaaagtataaagcctctacatgaacctttaatttgaagatcagaataagattcgggaagcagaaaatgaagattgagtgaagcagaa |
45366489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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