View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14704_low_3 (Length: 535)
Name: NF14704_low_3
Description: NF14704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14704_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 480; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 8 - 519
Target Start/End: Original strand, 31505007 - 31505518
Alignment:
| Q |
8 |
agatgaaaagcaatgtgcagagcatgtaatgctggttgatttggggcgcaatgatgttggaaaggtttgttctgtattttcactttaatggatgttccta |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31505007 |
agatgaaaagcaatgtgcagagcatgtaatgctggttgatttggggcgcaatgatgttggaaaggtttgttctgtattttcactttaatggatgttccta |
31505106 |
T |
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| Q |
108 |
tttgttcagcctgttacgttataatcttatgcaatagtttgcgatattattttgtgtatttaaagatgttgccagtcttgtttcttatattatgtttact |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31505107 |
tttgttcagcctgttacgttataatcttatgcaatagtttgcgatattattttgtgtatttaaagatgttgccagtcttgtttcttatattatgtttact |
31505206 |
T |
|
| Q |
208 |
gtaatctctattggagttgaagtttatgaaaattcaaagttacgtaaatgaatataagctaataactgggttcgatagtgcttttattnnnnnnnntata |
307 |
Q |
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| T |
31505207 |
gtaatctctattggacttgaagtttatgaaaattcaaagttacgtaaatgaatataagctaataactgggttcgatagtgcttttattaaaaaaaatata |
31505306 |
T |
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| Q |
308 |
tatgataagcagtgctaatattaggtccactcctttttatttgttaattgtggttgtcaatccatatcaacatgttcagttgttccttaaaagccaattt |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31505307 |
tatgataagcagtgctaatattaggtccactcctttttatttgttaattgtggttgtcaatccatatcaacatgttcagttgttccttaaaggccaattt |
31505406 |
T |
|
| Q |
408 |
gccactggactatttggttgtgttaggaaaagtaggtacatatgtacggatatggttcttcaaagttattgttaactgctgtatcatggatttacagtcg |
507 |
Q |
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| T |
31505407 |
gccactggactatttggttgtgttaggaaaagtaggtacatatgtacggatatggttcttcaaagttattgttaactgctgtatcatggatttacagtcg |
31505506 |
T |
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| Q |
508 |
gaaagttttatt |
519 |
Q |
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|||||||||||| |
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| T |
31505507 |
gaaagttttatt |
31505518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 279
Target Start/End: Complemental strand, 27609266 - 27608995
Alignment:
| Q |
8 |
agatgaaaagcaatgtgcagagcatgtaatgctggttgatttggggcgcaatgatgttggaaaggtttgttctgtattttcactttaatggatgttccta |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||| |||||||||| |
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| T |
27609266 |
agatgaaaagcaatgtgcagagcatgtaatgctggttgatttggggcgcaatgatgttggaaaggttttttttgtactttcactttaatagatgttccta |
27609167 |
T |
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| Q |
108 |
tttgttcagcctgttacgttataatcttatgcaatagtttgcgatattattttgtgtatttaaagatgttgccagtcttgtttcttatattatgtttact |
207 |
Q |
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| T |
27609166 |
tttgttaagcatgttacattataatcttatacaatagtttgcgctattattttatttatttaaagatgttgccagtcttgtttcttatattatgtttact |
27609067 |
T |
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| Q |
208 |
gtaatctctattggagttgaagtttatgaaaattcaaagttacgtaaatgaatataagctaataactgggtt |
279 |
Q |
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| T |
27609066 |
gtaatctctattggagttgaagtttatgaaaattcaaagttacataaatgaatataagctaataactgggtt |
27608995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 8 - 279
Target Start/End: Complemental strand, 34497736 - 34497464
Alignment:
| Q |
8 |
agatgaaaagcaatgtgcagagcatgtaatgctggttgatttggggcgcaatgatgttggaaaggtttgttctgtattttcactttaatggatgttccta |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||| |||||||||| |
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| T |
34497736 |
agatgaaaagcaatgtgcagagcatgtaatgctggttgatttggggcgcaatgatgttggaaaggttttttttgtactttcactttaatagatgttccta |
34497637 |
T |
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| Q |
108 |
tttgttcagcctgttacgttataatcttatgcaatagtttgcgatattattttgtgtatttaaaga---tgttgccagtcttgtttcttatattatgttt |
204 |
Q |
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| T |
34497636 |
tttgttaagcatgttacattataatcttat-caatagtttgtgctattatttttt-tatttaaagaagatgttgccagtcttgtttcttatattatgttt |
34497539 |
T |
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| Q |
205 |
actgtaatctctattggagttgaagtttatgaaaattcaaagttacgtaaatgaatataagctaataactgggtt |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34497538 |
actgtaatctctattggagttgaagtttatgaaaattcaaagttacataaatgaatataagctaataactgggtt |
34497464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 310 - 367
Target Start/End: Complemental strand, 34497149 - 34497092
Alignment:
| Q |
310 |
tgataagcagtgctaatattaggtccactcctttttatttgttaattgtggttgtcaa |
367 |
Q |
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|||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||| |
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| T |
34497149 |
tgataagcagtgctaacattaggtccacttctttttatttgttaattgtggttttcaa |
34497092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 327 - 367
Target Start/End: Complemental strand, 27608680 - 27608640
Alignment:
| Q |
327 |
attaggtccactcctttttatttgttaattgtggttgtcaa |
367 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| |
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| T |
27608680 |
attaggtccactcctttttatttgttaattgtggttttcaa |
27608640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 51686566 - 51686502
Alignment:
| Q |
9 |
gatgaaaagcaatgtgcagagcatgtaatgctggttgatttggggcgcaatgatgttggaaaggt |
73 |
Q |
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| T |
51686566 |
gatgaaaaacaatgtgcagaacatgtaatgctggtcgatttggggagaaatgatgttggaaaggt |
51686502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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