View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14704_low_31 (Length: 201)

Name: NF14704_low_31
Description: NF14704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14704_low_31
NF14704_low_31
[»] chr6 (5 HSPs)
chr6 (1-194)||(341806-341999)
chr6 (1-182)||(337780-337961)
chr6 (21-183)||(377533-377695)
chr6 (21-141)||(346807-346927)
chr6 (21-141)||(355466-355586)
[»] chr7 (3 HSPs)
chr7 (23-141)||(12164242-12164360)
chr7 (23-141)||(12175767-12175885)
chr7 (110-150)||(1033937-1033977)
[»] chr4 (1 HSPs)
chr4 (23-144)||(3321649-3321770)
[»] chr8 (1 HSPs)
chr8 (23-141)||(36668094-36668212)
[»] chr1 (4 HSPs)
chr1 (113-175)||(12963946-12964008)
chr1 (88-174)||(30368180-30368266)
chr1 (110-138)||(13891606-13891634)
chr1 (110-150)||(13895945-13895985)


Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 341999 - 341806
Alignment:
Q  1 ttgaatgaaagccaactctcttcccaaacaagtcctaggtccagcattaaaactaaagaacttgtaagacggcgcataaacaatgcctcctctctcagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  341999 ttgaatgaaagccaactctcttcccaaacaagtcctaggtccagcattaaaactaaagaacttgtaagacggcgcataaacaatgcctcctctctcagaa 341900  T
Q  101 atccacctctctggcttaaactccaagcaatcttttccccaaatattttcatcccttcccattgcatacaaagaaaacaatatcatattcttcg 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  341899 atccacctctctggcttaaactccaagcaatcttttccccaaatattttcatcccttcccattgcatacaaagaaaacaatatcatattattcg 341806  T

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Target: chr6; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 337961 - 337780
Alignment:
Q  1 ttgaatgaaagccaactctcttcccaaacaagtcctaggtccagcattaaaactaaagaacttgtaagacggcgcataaacaatgcctcctctctcagaa 100  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||    
T  337961 ttgaatcaaagccaactctcttcccaaacaagtccttggtccagcattaaaactaaagaatttgtaagatggtgcataaacaatgcctcctctctcagaa 337862  T
Q  101 atccacctctctggcttaaactccaagcaatcttttccccaaatattttcatcccttcccattgcatacaaagaaaacaata 182  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||| ||||    
T  337861 atccacctctctggcttgaactccaagcaatcttctccccaaatatttgcatcccttcccattgaatacaaagaaaaaaata 337780  T

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Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 183
Target Start/End: Complemental strand, 377695 - 377533
Alignment:
Q  21 ttcccaaacaagtcctaggtccagcattaaaactaaagaacttgtaagacggcgcataaacaatgcctcctctctcagaaatccacctctctggcttaaa 120  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||  ||| ||||||||  ||||||||||| ||||| ||||||||||| ||    
T  377695 ttcccaaacaagtccttggtccagcattaaaactaaagaacttataagacggttcatgaacaatgctacctctctcagatatccatctctctggcttgaa 377596  T
Q  121 ctccaagcaatcttttccccaaatattttcatcccttcccattgcatacaaagaaaacaatat 183  Q
    |||||||||||||| |||||| || | ||||   || ||||||| |||||||||||| |||||    
T  377595 ctccaagcaatcttctccccatatctcttcaaatctccccattgaatacaaagaaaataatat 377533  T

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Target: chr6; HSP #4
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 21 - 141
Target Start/End: Original strand, 346807 - 346927
Alignment:
Q  21 ttcccaaacaagtcctaggtccagcattaaaactaaagaacttgtaagacggcgcataaacaatgcctcctctctcagaaatccacctctctggcttaaa 120  Q
    ||||||||||||| ||||||||||||||| ||||||  ||||||||||| || | || ||||||||||||||||||||| ||||| ||||||||||| ||    
T  346807 ttcccaaacaagttctaggtccagcattataactaataaacttgtaagatggtgtatgaacaatgcctcctctctcagatatccatctctctggcttgaa 346906  T
Q  121 ctccaagcaatcttttcccca 141  Q
    |||||| ||||||||||||||    
T  346907 ctccaaacaatcttttcccca 346927  T

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Target: chr6; HSP #5
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 21 - 141
Target Start/End: Original strand, 355466 - 355586
Alignment:
Q  21 ttcccaaacaagtcctaggtccagcattaaaactaaagaacttgtaagacggcgcataaacaatgcctcctctctcagaaatccacctctctggcttaaa 120  Q
    ||||||||||||| ||||||||||||||| ||||||  ||||||||||| || | || ||||||||||||||||||||| ||||| ||||||||||| ||    
T  355466 ttcccaaacaagttctaggtccagcattataactaataaacttgtaagatggtgtatgaacaatgcctcctctctcagatatccatctctctggcttgaa 355565  T
Q  121 ctccaagcaatcttttcccca 141  Q
    |||||| ||||||||||||||    
T  355566 ctccaaacaatcttttcccca 355586  T

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Target: chr7 (Bit Score: 59; Significance: 3e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 23 - 141
Target Start/End: Original strand, 12164242 - 12164360
Alignment:
Q  23 cccaaacaagtcctaggtccagcattaaaactaaagaacttgtaagacggcgcataaacaatgcctcctctctcagaaatccacctctctggcttaaact 122  Q
    ||||||||| |||| |||||||||||||||  || |||||||||||| ||  ||||||| || |||||| | | |||||||||||||||||||||||| |    
T  12164242 cccaaacaactccttggtccagcattaaaagcaatgaacttgtaagaaggaacataaactatccctcctttttgagaaatccacctctctggcttaaatt 12164341  T
Q  123 ccaagcaatcttttcccca 141  Q
    |||||||||||| ||||||    
T  12164342 ccaagcaatcttctcccca 12164360  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 141
Target Start/End: Original strand, 12175767 - 12175885
Alignment:
Q  23 cccaaacaagtcctaggtccagcattaaaactaaagaacttgtaagacggcgcataaacaatgcctcctctctcagaaatccacctctctggcttaaact 122  Q
    ||||||||| |||| ||||||||||| |||  || |||||||||||| ||  ||| ||  || |||||| ||| |||||||||||||||||| ||||| |    
T  12175767 cccaaacaactccttggtccagcattgaaagcaatgaacttgtaagagggaacatgaattatccctcctttcttagaaatccacctctctggtttaaatt 12175866  T
Q  123 ccaagcaatcttttcccca 141  Q
     ||| ||||||| ||||||    
T  12175867 tcaaacaatcttctcccca 12175885  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 1033937 - 1033977
Alignment:
Q  110 tctggcttaaactccaagcaatcttttccccaaatattttc 150  Q
    |||||||| |||||||||||||||||||| || ||||||||    
T  1033937 tctggcttgaactccaagcaatcttttcctcatatattttc 1033977  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 144
Target Start/End: Complemental strand, 3321770 - 3321649
Alignment:
Q  23 cccaaacaagtcctaggtccagcattaaaactaaagaacttgtaagacggcgcataaacaatgcctcctctctcagaaatccacctctctggcttaaact 122  Q
    ||||||||| |||| ||||||||||| |||  ||  ||||||||||| ||  ||| ||  ||  ||||| ||| |||||||||||||||||| |||||||    
T  3321770 cccaaacaactccttggtccagcattgaaagcaataaacttgtaagaaggtacatgaattatttctcctttcttagaaatccacctctctggtttaaact 3321671  T
Q  123 ccaagcaatcttttccccaaat 144  Q
    |||||||||||| |||||||||    
T  3321670 ccaagcaatcttctccccaaat 3321649  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 23 - 141
Target Start/End: Original strand, 36668094 - 36668212
Alignment:
Q  23 cccaaacaagtcctaggtccagcattaaaactaaagaacttgtaagacggcgcataaacaatgcctcctctctcagaaatccacctctctggcttaaact 122  Q
    ||||||| | |||| ||||||||||| |||  || |||||||||||| ||  ||| ||   | |||||| ||| ||||| |||||||||||| ||||| |    
T  36668094 cccaaacgactccttggtccagcattgaaagcaatgaacttgtaagaaggtacatgaattgtccctcctttcttagaaacccacctctctggtttaaatt 36668193  T
Q  123 ccaagcaatcttttcccca 141  Q
    |||||||||||| ||||||    
T  36668194 ccaagcaatcttctcccca 36668212  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 175
Target Start/End: Complemental strand, 12964008 - 12963946
Alignment:
Q  113 ggcttaaactccaagcaatcttttccccaaatattttcatcccttcccattgcatacaaagaa 175  Q
    |||||||| ||||||||||||| |||||| || | |||   ||||||||||||||||||||||    
T  12964008 ggcttaaattccaagcaatcttctccccatatttgttccatccttcccattgcatacaaagaa 12963946  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 174
Target Start/End: Complemental strand, 30368266 - 30368180
Alignment:
Q  88 tcctctctcagaaatccacctctctggcttaaactccaagcaatcttttccccaaatattttcatcccttcccattgcatacaaaga 174  Q
    ||||||||| || | ||| ||||| |||||||| |||| |||||||| |||||| || |||||   ||||||||| |||||||||||    
T  30368266 tcctctctctgatacccatctctcaggcttaaattccatgcaatcttctccccatattttttccatccttcccatagcatacaaaga 30368180  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 138
Target Start/End: Original strand, 13891606 - 13891634
Alignment:
Q  110 tctggcttaaactccaagcaatcttttcc 138  Q
    |||||||||||||||||||||||||||||    
T  13891606 tctggcttaaactccaagcaatcttttcc 13891634  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 13895945 - 13895985
Alignment:
Q  110 tctggcttaaactccaagcaatcttttccccaaatattttc 150  Q
    |||||||| ||||||||||||||||||||||| || |||||    
T  13895945 tctggcttgaactccaagcaatcttttccccatatgttttc 13895985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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