View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14704_low_4 (Length: 518)
Name: NF14704_low_4
Description: NF14704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14704_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 20 - 339
Target Start/End: Original strand, 17379988 - 17380309
Alignment:
| Q |
20 |
gtttgacacatcaatgggtagtttatactgnnnnnnnactc--tcttatcttctgagtatttttacaaatcctattttgtctttgatcgacaagaaaaga |
117 |
Q |
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| T |
17379988 |
gtttgacacatcaatgggtagtttatgctgtttttttactcgatcttatcttctgagtatttttacaaatcctactttgtctttgatcgacaagaaaaga |
17380087 |
T |
|
| Q |
118 |
actcaacaacatagagcattgggaatatccttatcatgttctagattgtgtttcatctcatctaacagcatttaaaatatagactatgaaccattggaag |
217 |
Q |
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| T |
17380088 |
actcaacaacttagagcattgggaatatccatatcatgttctagattgtgtttcatctcatctaacatcatttaaaatatagactatgaaccattggaag |
17380187 |
T |
|
| Q |
218 |
ctgattttcaaatcaagacatatattttgcagaatgtgattgtgacttttacagattatgaccatttgtcattctctcgtcacccaaatccaatgaagag |
317 |
Q |
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| T |
17380188 |
ctgattttcgaatcacgacatatattttgcagaatgtgattgtgacttttacagattatgaccatttgtcattctctcgtcacccaaatccaatgaagag |
17380287 |
T |
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| Q |
318 |
ccctcaatttttagaaaattta |
339 |
Q |
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| T |
17380288 |
ccctcaatctttagaaaattta |
17380309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 387 - 513
Target Start/End: Original strand, 17380467 - 17380589
Alignment:
| Q |
387 |
cttgtgtcaatatcttttgaattttgaattgttgttaggtcgtaattggattgacgtgtgcatggtctgcacaaaatatttctacatgacttagtttttc |
486 |
Q |
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| T |
17380467 |
cttgtgtcaatatcttttgaattttgaattgttgttaggtcttaattggattgaagtgtg----gtctgcacaaaatatttctacatgacttaatttttc |
17380562 |
T |
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| Q |
487 |
tgttatactattactgatattcttcat |
513 |
Q |
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| T |
17380563 |
tgttatactattactgatattcttcat |
17380589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 114 - 339
Target Start/End: Original strand, 17392578 - 17392799
Alignment:
| Q |
114 |
aagaactcaacaac-atagagcattgggaatatccttatcatgttctagattgtgtttcatctcatctaacagcatttaaaat-atagactatgaaccat |
211 |
Q |
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| T |
17392578 |
aagaattcaacaaccatagagcattgggaatatccagatcatgttccagaatgtgtttcgtctcatctaacaaaatttgaagttatagactatgaagctt |
17392677 |
T |
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| Q |
212 |
tggaagctgattttcaaatcaagacatatattttgcagaatgtgattgtgacttttacagattatgaccatttgtcattctctcgtcacccaaatccaat |
311 |
Q |
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| T |
17392678 |
gcgaagctgattttcgattcgcaacatatattttgcagaatgcga----gacttttacaagttatgaccattcatcatactct--tcacccaaatccaat |
17392771 |
T |
|
| Q |
312 |
gaagagccctcaatttttagaaaattta |
339 |
Q |
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| T |
17392772 |
ggagagccctcaatttttagaaaattta |
17392799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 72 - 339
Target Start/End: Original strand, 17383826 - 17384088
Alignment:
| Q |
72 |
gagtatttttacaaatcctattttgtctttgatcgacaagaaaagaactcaacaa-catagagcattgggaatatccttatcatgttctagattgtgttt |
170 |
Q |
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| T |
17383826 |
gagtatttttacatatcctattttgtctcggattgacaggcggagaattcagcaagcatagagcattgggaatatccagatcatgttccagaatgtgttt |
17383925 |
T |
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| Q |
171 |
catctcatctaacagcatttaaaat-atagactatgaaccattggaagctgattttcaaatcaagacatatattttgcagaatgtgattgtgacttttac |
269 |
Q |
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| T |
17383926 |
cgtctaatctaacaaaatttgaagttatgcactatgaagcttgggaagctgattttcgattcgcaacatatattttgcagaatgcga----gacttttgc |
17384021 |
T |
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| Q |
270 |
agattatgaccatttgtcattctctcgtcacccaaatccaatgaagagccctcaatttttagaaaattta |
339 |
Q |
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| T |
17384022 |
agat-atgaccatttgccatactct--tcacccaaatccaatggagagccctcaatttttagaaaattta |
17384088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 390 - 513
Target Start/End: Original strand, 17389519 - 17389638
Alignment:
| Q |
390 |
gtgtcaatatcttttgaattttgaattgttgttaggtcgtaattggattgacgtgtgcatggtctgcacaaaatatttctacatgacttagtttttctgt |
489 |
Q |
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| T |
17389519 |
gtgtcaatatcttttgaattttgaattgttgttaggtcataattggatttacttgt---aggtgtgcacataat-tttctacatgacttattttttctgt |
17389614 |
T |
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| Q |
490 |
tatactattactgatattcttcat |
513 |
Q |
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| T |
17389615 |
tatactattattgatattcttcat |
17389638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 184
Target Start/End: Original strand, 17377460 - 17377571
Alignment:
| Q |
71 |
tgagtatttttacaaatcctattttgtctttgatcgacaagaaaagaactcaacaa-catagagcattgggaatatccttatcatgttctagattgtgtt |
169 |
Q |
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||||||||||||||||||||||||||||| |||||||| | || || ||||||| ||||| ||||||||||||| ||||||||| ||| |||||| |
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| T |
17377460 |
tgagtatttttacaaatcctattttgtctcggatcgacaggcgaataattcaacaaccatag---attgggaatatccagatcatgttccagaatgtgtt |
17377556 |
T |
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| Q |
170 |
tcatctcatctaaca |
184 |
Q |
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| T |
17377557 |
tcgtctcatctaaca |
17377571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 71 - 253
Target Start/End: Complemental strand, 26052928 - 26052744
Alignment:
| Q |
71 |
tgagtatttttacaaatcctattttgtctttgatcgacaagaaaagaactcaacaac-atagagcattgggaatatccttatcatgttctagattgtgtt |
169 |
Q |
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||||||||||||||||||||||||||| | ||| |||| || ||| | |||||||| |||||||||||||||||||| ||||||||| ||| |||||| |
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| T |
26052928 |
tgagtatttttacaaatcctattttgtatcggattgacaggagaagtattcaacaaccatagagcattgggaatatccagatcatgttccagaatgtgtt |
26052829 |
T |
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| Q |
170 |
tcatctcatctaacagcattt-aaaatatagactatgaaccattggaagctgattttcaaatcaagacatatattttgcagaatg |
253 |
Q |
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| T |
26052828 |
tcatctcatctaacaaaatttgaagttatagactatgaagcttgtgaaactgatattcgattcgcaacatatattttgcagaatg |
26052744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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