View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14704_low_5 (Length: 498)
Name: NF14704_low_5
Description: NF14704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14704_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 19 - 461
Target Start/End: Original strand, 5685659 - 5686099
Alignment:
| Q |
19 |
gattatgttacatatgtagtgacttaagcnnnnnnnntgttgatacattattgctatgtttgtaattagtaatagatacaagaatattgttatcttagag |
118 |
Q |
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| T |
5685659 |
gattatgtcacatatgtagtgacttaagcaaaaaaaatgttgatacattattgctatgtttgtaattagtaatagatacaagaatattgttatcttagag |
5685758 |
T |
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| Q |
119 |
attttctagtaattttttagtgtgtaatttctacccttagaattactctataaatgtactattatgaattatgagtgtgatatgaatattatttcaatac |
218 |
Q |
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| T |
5685759 |
attttctagtaatttttgagtgtgtaatttctaccctt-gaattgctctataaatgtactattatgaattatgagtgtgatatgaatattatttcaatac |
5685857 |
T |
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| Q |
219 |
ttgaacaaaagttgctgaagagcgaagactatatgtctgggccaagttaatgagaaagaccaaatgcagaaatgtgtggaaatgtaagaatttagaacca |
318 |
Q |
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| T |
5685858 |
ttgaacaaaagttgctgaagagtgaagactatatgtctgggccaagttaatgagaaagaccaaatgcagaaatgtgtggaaatgtaagaatttagaacca |
5685957 |
T |
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| Q |
319 |
taatccaaatgttttattaaagagtggtaaatttatgttgtacaatgatagtgttactatgcatccatgtcaataatgaaagatgataattggaaatgag |
418 |
Q |
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| T |
5685958 |
taatccaaatgttttattaaagagtggtata-ttatgttgtacaatgatagtgctactatgcatccatgtgaataatgaaagatgataattggaaatgag |
5686056 |
T |
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| Q |
419 |
tggttttgatttatattggacaaaattgtaccatgttttatat |
461 |
Q |
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| T |
5686057 |
tggttttgatttatattggacaaaattgtaccatattttatat |
5686099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 289 - 490
Target Start/End: Original strand, 5697709 - 5697910
Alignment:
| Q |
289 |
aatgtgtggaaatgtaagaatttagaaccataatccaaatgttttattaaagagtggtaaatttatgttgtacaatgatagtgttactatgcatccatgt |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5697709 |
aatgtgtggaaatgtaagaatttagaaccataatccaaatgttttattaaagagtggtaaatttatgttgtacaatgatagtgttactatgcatccatgt |
5697808 |
T |
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| Q |
389 |
caataatgaaagatgataattggaaatgagtggttttgatttatattggacaaaattgtaccatgttttatatttagaagcacaaccttaatccttgata |
488 |
Q |
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| T |
5697809 |
gaataatgaaagatgataattggaaatgagtggtttggatttatattggacaaaattgtaccatgttttatatttagaagcacaaccttaatccttgata |
5697908 |
T |
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| Q |
489 |
tt |
490 |
Q |
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|| |
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| T |
5697909 |
tt |
5697910 |
T |
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