View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14704_low_7 (Length: 337)
Name: NF14704_low_7
Description: NF14704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14704_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 113 - 211
Target Start/End: Original strand, 29950035 - 29950133
Alignment:
| Q |
113 |
ccagcacctgatcctgttttagaaatggtgaaagcttatagggcatataatcctcacatgactacatattactatgttcaaagtatggaagagaatcca |
211 |
Q |
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| T |
29950035 |
ccagcacctgatcctgttttagagatggtgaaggcttatagggcatataatccccacatgaccacatattactatgttcaaagtatggaagagaatcca |
29950133 |
T |
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Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 202 - 321
Target Start/End: Complemental strand, 29948281 - 29948162
Alignment:
| Q |
202 |
agagaatccatctattaaaacaaaaagaagagaattatgcnnnnnnnnnnnnnnntttgagtcctaacttgattaaaaaacaatatagtttgcattgtag |
301 |
Q |
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| T |
29948281 |
agagaatccatctattaaaacaaaaagaagagaattatgcaaaataaaaataaaaatagagtcctaacttgattaaaaaacaatatagtttgcattgtag |
29948182 |
T |
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| Q |
302 |
atcaaatgtcacgtgtcaat |
321 |
Q |
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| T |
29948181 |
atcaaatgtcacgtgtcaat |
29948162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 210
Target Start/End: Complemental strand, 10979112 - 10979050
Alignment:
| Q |
148 |
ttatagggcatataatcctcacatgactacatattactatgttcaaagtatggaagagaatcc |
210 |
Q |
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| T |
10979112 |
ttatagagcatataatccctatatgacaacacattaccatgttcaaagcatggaagagaatcc |
10979050 |
T |
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