View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14704_low_9 (Length: 331)
Name: NF14704_low_9
Description: NF14704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14704_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 312
Target Start/End: Original strand, 7450937 - 7451235
Alignment:
| Q |
15 |
attttgatcaaatgtacgttgaatgtaaaatctatttttaaaaatgtgtattttgatcattttaaaaacttcggannnnnnnaatggagactcacagtaa |
114 |
Q |
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| T |
7450937 |
attttgatcaaatgtacgttgaatgtaaaatctatttttaaaaatgtgtattttgatcattttaaaaacttcagatttttttaatggagactcacggtaa |
7451036 |
T |
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| Q |
115 |
atgaccaatttaaaactaannnnnnn-aaaatgattgatctaatattctcttcggtcctatttataagaaaattttcaaaaagatttcaagaaccaagga |
213 |
Q |
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| T |
7451037 |
atgaccaatttaaaactaattttttttaaaatgattgatctaatattttcttcgatcctatttataagaaaattttcaaaaagatctcaagaaccaagga |
7451136 |
T |
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| Q |
214 |
cactaccttggtccatgcactttggagtgattggttcatatttcgtggcgggctgagagccactctagtctctcaacctcgaagttagagctaggcagt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7451137 |
cactaccttggtccatgcactttggagtgattggttcatatttcgtgggggtgtgtgagccactctagtctctcaacctcgaagttagagctagacagt |
7451235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 306
Target Start/End: Original strand, 7437753 - 7437839
Alignment:
| Q |
219 |
ccttggtccatgcactttggagtgattggttcatatttcgtggcgggctgagagccactctagtctctcaacctcgaagttagagcta |
306 |
Q |
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| T |
7437753 |
ccttggtgcatgcgctttggattgattggtttgtatttcgtggggtg-tgtgagccactctactccctcatccttgaagttagagcta |
7437839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 193
Target Start/End: Original strand, 6657855 - 6657888
Alignment:
| Q |
160 |
tctcttcggtcctatttataagaaaattttcaaa |
193 |
Q |
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| T |
6657855 |
tctcttcggtcctatttataagaaaattttcaaa |
6657888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 195
Target Start/End: Original strand, 4641029 - 4641058
Alignment:
| Q |
166 |
cggtcctatttataagaaaattttcaaaaa |
195 |
Q |
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| T |
4641029 |
cggtcctatttataagaaaattttcaaaaa |
4641058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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