View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14705_high_11 (Length: 333)
Name: NF14705_high_11
Description: NF14705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14705_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 14 - 139
Target Start/End: Original strand, 4774745 - 4774870
Alignment:
| Q |
14 |
gattatactggagaaacatttcgcaggagataatctcttccccttacttaaatgcatcaatgtctttcttttaagaatcgatatcaatttttgtttacgg |
113 |
Q |
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| T |
4774745 |
gattttactggagaaacatttcgcaggagataatctcttccccttacttaaatgcatcaatgtctttcttttaagaatcgatatcaatttttgtttacgg |
4774844 |
T |
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| Q |
114 |
aacaataaaataaaccgtttccttca |
139 |
Q |
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| T |
4774845 |
aacaataaaataaaccgtttccttca |
4774870 |
T |
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Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 211 - 333
Target Start/End: Original strand, 4774941 - 4775063
Alignment:
| Q |
211 |
tttggggttaataccttaaataaacactaatttagcaatgactgattttcttaaaaggctnnnnnnntgatatattaacaaatcaggatcaactgtctca |
310 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||| |
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| T |
4774941 |
tttggggttaatatcttaaataaacactaatttagcaatgactgattttcttaaaaggctaaaaaaatggtatattaacaaatcaggatcaactgtttca |
4775040 |
T |
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| Q |
311 |
gcataggtgtacgaaaccaaccc |
333 |
Q |
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| T |
4775041 |
gcataggtgtacgaaaccaaccc |
4775063 |
T |
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