View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14705_high_13 (Length: 299)
Name: NF14705_high_13
Description: NF14705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14705_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 6e-77; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 116 - 293
Target Start/End: Original strand, 33417050 - 33417225
Alignment:
| Q |
116 |
tatagagaataacaaacacttttacttcaaagttctaaacataaaaagagatgaaaaggactagtatatnnnnnnngagtgagagattttaccaacaaca |
215 |
Q |
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| T |
33417050 |
tatagagaataacaaacacttttacttcaaagttctaaacataaa--gagatgaaaaggactagtatataaaaaaagagtgagagattttaccaacaaca |
33417147 |
T |
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| Q |
216 |
aaggaacaagctttccaaccaccagttttggatctaagaacaggtttccctttaagattcacagttccatcttctgtg |
293 |
Q |
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| T |
33417148 |
aaggaacaagctttccaaccaccagttttggatctaagaacaggtttccctttaagattcacagttccatcttctgtg |
33417225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 205 - 293
Target Start/End: Complemental strand, 15733898 - 15733810
Alignment:
| Q |
205 |
taccaacaacaaaggaacaagctttccaaccaccagttttggatctaagaacaggtttccctttaagattcacagttccatcttctgtg |
293 |
Q |
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| T |
15733898 |
taccaacaaagaaggaacaagctttccaacaaccagttttagatttgagaataggtttccctttaagatcaacagttccatcttctgtg |
15733810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 205 - 293
Target Start/End: Complemental strand, 15725847 - 15725759
Alignment:
| Q |
205 |
taccaacaacaaaggaacaagctttccaaccaccagttttggatctaagaacaggtttccctttaagattcacagttccatcttctgtg |
293 |
Q |
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| T |
15725847 |
taccaacaaagaatgaacaagctttccaacaaccagttttggatttgagaataggtttccctttaagatcaacagttccatcttgtgtg |
15725759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 205 - 293
Target Start/End: Complemental strand, 15775030 - 15774942
Alignment:
| Q |
205 |
taccaacaacaaaggaacaagctttccaaccaccagttttggatctaagaacaggtttccctttaagattcacagttccatcttctgtg |
293 |
Q |
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| T |
15775030 |
taccaacaaggaaggagcaagctttccagccacctgtttttgatctgagaacaggttttcctttaagatcaacagttccatcttgtgtg |
15774942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 293
Target Start/End: Complemental strand, 15753145 - 15753053
Alignment:
| Q |
201 |
attttaccaacaacaaaggaacaagctttccaaccaccagttttggatctaagaacaggtttccctttaagattcacagttccatcttctgtg |
293 |
Q |
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| T |
15753145 |
attttaccaacaagaaatgagcaagctttccaaccacctgtcttggatctgagaacagaatttcctttaagatcaatagttccatcttttgtg |
15753053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 273
Target Start/End: Complemental strand, 15761731 - 15761663
Alignment:
| Q |
205 |
taccaacaacaaaggaacaagctttccaaccaccagttttggatctaagaacaggtttccctttaagat |
273 |
Q |
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| T |
15761731 |
taccaacaaggaatgagcaagctttccaacgacctgtcttggatcttagaacaggttttccattaagat |
15761663 |
T |
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