View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14705_high_26 (Length: 237)
Name: NF14705_high_26
Description: NF14705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14705_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 26619391 - 26619173
Alignment:
| Q |
17 |
accatatcaacaataaatggattacttgtgcaacaagtaactagttggcagttatagttgttagttagaaatgattacttaatcattgcatagctttgag |
116 |
Q |
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| T |
26619391 |
accatatcaacaataaatggattacttgtgcaacaagtaactagttggcagttatagttgttagttagaaatgattacttaatcattgcatagctttgag |
26619292 |
T |
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| Q |
117 |
tttgttatgtgttagcaatctaatgtaggttacttgcaataagctatcatagagttcaatatgcgtatataagctccttgtgctctcataattcagtaat |
216 |
Q |
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| T |
26619291 |
tttgttatgtgttagcaatctaatgtaggttacttgcaataagctatcatagagttcaatatgcgtatataagctccttgtg-tctcataattcagtaat |
26619193 |
T |
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| Q |
217 |
aaaagtcaattttactttct |
236 |
Q |
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|||||||||||||||||||| |
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| T |
26619192 |
aaaagtcaattttactttct |
26619173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 79 - 189
Target Start/End: Original strand, 52548585 - 52548695
Alignment:
| Q |
79 |
agttagaaatgattacttaatcattgcatagctttgagtttgttatgtgttagcaatctaatgtaggttacttgcaataagctatcatagagttcaatat |
178 |
Q |
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||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||| | |||||||||| ||||||| ||||||| |
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| T |
52548585 |
agttagaaatgattacttattcattgcataactttgagtttgttaagtgttagcaatctaatgtaggttacatacaataagctaacatagagctcaatat |
52548684 |
T |
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| Q |
179 |
gcgtatataag |
189 |
Q |
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| T |
52548685 |
gcgtatataag |
52548695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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