View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14705_high_3 (Length: 533)

Name: NF14705_high_3
Description: NF14705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14705_high_3
NF14705_high_3
[»] chr3 (3 HSPs)
chr3 (93-528)||(25914943-25915378)
chr3 (174-528)||(25901006-25901360)
chr3 (13-58)||(25914862-25914907)
[»] chr4 (12 HSPs)
chr4 (194-528)||(10571023-10571357)
chr4 (194-528)||(10553293-10553627)
chr4 (174-332)||(10464472-10464630)
chr4 (179-255)||(10482452-10482528)
chr4 (182-257)||(10475482-10475557)
chr4 (177-260)||(829343-829425)
chr4 (193-255)||(10468313-10468375)
chr4 (175-252)||(8437025-8437102)
chr4 (175-252)||(8447379-8447456)
chr4 (209-261)||(838005-838057)
chr4 (182-257)||(10484704-10484779)
chr4 (463-519)||(837774-837830)
[»] chr5 (1 HSPs)
chr5 (176-317)||(37935285-37935426)
[»] chr7 (1 HSPs)
chr7 (210-257)||(19645452-19645499)
[»] chr2 (2 HSPs)
chr2 (448-522)||(25377069-25377143)
chr2 (213-253)||(21021047-21021087)


Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 93 - 528
Target Start/End: Original strand, 25914943 - 25915378
Alignment:
Q  93 tttgatttcaaacaactgaatcggttaagcaatcccacaatctatttctagtattataaattaaaccaacaaggctgtaaagaagtaacataaattctat 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  25914943 tttgatttcaaacaactgaatcggttaagcaatcccacaatctatttctagtattataaattaaaccaacaaggctgtaaagaagtgacataaattctat 25915042  T
Q  193 caagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatccttagcccacaaccaccgtactttattagtaatttgaa 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25915043 caagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatccttagcccacaaccaccgtactttattagtaatttgaa 25915142  T
Q  293 ttggctcacctctattttctctgcatttatagataaatgctgtgtcgatttgatcatttgctaatatcaatgcatcacctttcttagaaaggtacaatgg 392  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25915143 ttggctcgcctctattttctctgcatttatagataaatgctgtgtcgatttgatcatttgctaatatcaatgcatcacctttcttagaaaggtacaatgg 25915242  T
Q  393 caagaactccatcgtttcaaatttcaataaagattggcttgaacaaaaattttgctaactattttttaaaaattgaatcctagactcttgaagtcgaaaa 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||| |||||||||| ||||||||||| |||||||    
T  25915243 caagaactccatcgtttcaaatttcaataaagattggcttgaacaaaaattctgataactaatttttaacaattgaatccaagactcttgaactcgaaaa 25915342  T
Q  493 tttgtcattttccatataacaaaatggtttcccttg 528  Q
    |   ||||||||||||||||||||||| ||||||||    
T  25915343 tccttcattttccatataacaaaatggcttcccttg 25915378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 174 - 528
Target Start/End: Original strand, 25901006 - 25901360
Alignment:
Q  174 gaagtaacataaattctatcaagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatccttagcccacaaccaccgt 273  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  25901006 gaagtaacataaattctaacaagtaatatgagaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatccttggcccacaaccactgt 25901105  T
Q  274 actttattagtaatttgaattggctcacctctattttctctgcatttatagataaatgctgtgtcgatttgatcatttgctaatatcaatgcatcacctt 373  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  25901106 actttattagtaatttgaattggctcgcctctattttctctgcatttatagataaatgctgcgtcgatttgatcatttgctaatatcaatgcatcacctt 25901205  T
Q  374 tcttagaaaggtacaatggcaagaactccatcgtttcaaatttcaataaagattggcttgaacaaaaattttgctaactattttttaaaaattgaatcct 473  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||| || |||||| ||||||| ||||||||||     
T  25901206 tcttagaaaggtacaatggcaataactccatcgtttcaaatttcaataaatattggcttgaacaaatattctgataactaatttttaacaattgaatcca 25901305  T
Q  474 agactcttgaagtcgaaaatttgtcattttccatataacaaaatggtttcccttg 528  Q
    ||||||||||| ||||||||   ||||||||||||||||||||||| ||||||||    
T  25901306 agactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttg 25901360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 25914862 - 25914907
Alignment:
Q  13 tcgaagaaaatcaattgaatactacgtaacagcaatgaaattgaag 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  25914862 tcgaagaaaatcaattgaatactacgtaacagcaatgaaattgaag 25914907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 155; Significance: 5e-82; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 194 - 528
Target Start/End: Original strand, 10571023 - 10571357
Alignment:
Q  194 aagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatccttagcccacaaccaccgtactttattagtaatttgaat 293  Q
    |||||||||||  |||||||||||||||||| | ||||| |||||||||||||||||||||||| ||||| ||||||| || |||||||||||||  |||    
T  10571023 aagtaatatgaggaagagaaactcactttcatcgagttggaaccaaactttcaacgtaatccttggcccataaccaccatattttattagtaattctaat 10571122  T
Q  294 tggctcacctctattttctctgcatttatagataaatgctgtgtcgatttgatcatttgctaatatcaatgcatcacctttcttagaaaggtacaatggc 393  Q
    | |||| |||||||| |||||||| ||||||||||||| ||||||| ||| ||||||||| ||||||||||  ||  | |||||||||||||||||||||    
T  10571123 ttgctcgcctctattgtctctgcaattatagataaatgttgtgtcgttttcatcatttgcaaatatcaatgtttccgcattcttagaaaggtacaatggc 10571222  T
Q  394 aagaactccatcgtttcaaatttcaataaagattggcttgaacaaaaattttgctaactattttttaaaaattgaatcctagactcttgaagtcgaaaat 493  Q
    || ||||||||||||||||||||||||||| ||| |||||||   ||||| |  |||||| |||| || || ||||||| ||||||||||| || |||||    
T  10571223 aataactccatcgtttcaaatttcaataaatattcgcttgaatggaaattctcataactaattttaaacaactgaatccaagactcttgaactccaaaat 10571322  T
Q  494 ttgtcattttccatataacaaaatggtttcccttg 528  Q
     |||||||||||||| ||||| |||  ||||||||    
T  10571323 ctgtcattttccataaaacaagatgacttcccttg 10571357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 194 - 528
Target Start/End: Original strand, 10553293 - 10553627
Alignment:
Q  194 aagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatccttagcccacaaccaccgtactttattagtaatttgaat 293  Q
    |||||||||||  |||||||||||||||||| | ||||| |||||||||||||||||||||||| ||||| ||||||| || |||||||||||||  |||    
T  10553293 aagtaatatgaggaagagaaactcactttcatcgagttggaaccaaactttcaacgtaatccttggcccataaccaccatattttattagtaattctaat 10553392  T
Q  294 tggctcacctctattttctctgcatttatagataaatgctgtgtcgatttgatcatttgctaatatcaatgcatcacctttcttagaaaggtacaatggc 393  Q
    | |||| |||||||| |||||||| ||||||||||||| ||||||| ||| ||||||||| ||||||||||  ||  | |||||||||||||||||||||    
T  10553393 ttgctcgcctctattgtctctgcaattatagataaatgttgtgtcgttttcatcatttgcaaatatcaatgtttccgcattcttagaaaggtacaatggc 10553492  T
Q  394 aagaactccatcgtttcaaatttcaataaagattggcttgaacaaaaattttgctaactattttttaaaaattgaatcctagactcttgaagtcgaaaat 493  Q
    || ||||||||||||||||||||||||||| ||| |||||||   ||||| |  |||||| | || |  || ||||||| ||||||||||| || |||||    
T  10553493 aataactccatcgtttcaaatttcaataaatattcgcttgaatggaaattctcataactaatgttaagcaactgaatccaagactcttgaactccaaaat 10553592  T
Q  494 ttgtcattttccatataacaaaatggtttcccttg 528  Q
     |||||||||||||| ||||| |||| ||||||||    
T  10553593 ctgtcattttccataaaacaagatggcttcccttg 10553627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 174 - 332
Target Start/End: Complemental strand, 10464630 - 10464472
Alignment:
Q  174 gaagtaacataaattctatcaagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatccttagcccacaaccaccgt 273  Q
    ||||||| |||||||||| |||||||||||   ||||||||||||||||||||  || ||||| | |||||||||||||||||| ||   ||||||   |    
T  10464630 gaagtaatataaattctaacaagtaatatgtggaagagaaactcactttcaacgtgtcgaaactagactttcaacgtaatccttggcatgcaaccataat 10464531  T
Q  274 actttattagtaatttgaattggctcacctctattttctctgcatttatagataaatgc 332  Q
    ||  || ||||||||  |||| ||||  ||||||| ||| ||| |||||||||||||||    
T  10464530 acagtactagtaattccaattcgctctactctattgtctttgcctttatagataaatgc 10464472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 10482528 - 10482452
Alignment:
Q  179 aacataaattctatcaagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatcc 255  Q
    ||||||||||| | |||||||||||   |||||||||||||||||||  ||| ||||||||||||||||||||||||    
T  10482528 aacataaattcaaacaagtaatatgtggaagagaaactcactttcaatgagtcgaaaccaaactttcaacgtaatcc 10482452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 257
Target Start/End: Complemental strand, 10475557 - 10475482
Alignment:
Q  182 ataaattctatcaagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatcctt 257  Q
    |||||||| | |||||||||||   ||||||||||||||||||||  || ||||| ||||||||||||||||||||    
T  10475557 ataaattcaaacaagtaatatgtggaagagaaactcactttcaacgtgtcgaaactaaactttcaacgtaatcctt 10475482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 829343 - 829425
Alignment:
Q  177 gtaacataaattctatcaagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatccttagc 260  Q
    ||||||||||||| | ||||| |||||  |||||||||||||||||||   | | |||||||||||||||| ||||||||||||    
T  829343 gtaacataaattcaaacaagtcatatgtgaaagagaaactcactttcatagaatcgaaaccaaactttcaa-gtaatccttagc 829425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 10468375 - 10468313
Alignment:
Q  193 caagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatcc 255  Q
    |||||||||||   |||||||||||||||||||  |||  |||||||||||||||||||||||    
T  10468375 caagtaatatgtggaagagaaactcactttcaatgagtcaaaaccaaactttcaacgtaatcc 10468313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 175 - 252
Target Start/End: Original strand, 8437025 - 8437102
Alignment:
Q  175 aagtaacataaattctatcaagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaa 252  Q
    |||||||| |||||| |  ||||||||||   || |||||||||| |||||| ||| |||||||||||||||||||||    
T  8437025 aagtaacaaaaattcaaaaaagtaatatgtggaatagaaactcacattcaacgagtcgaaaccaaactttcaacgtaa 8437102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 175 - 252
Target Start/End: Original strand, 8447379 - 8447456
Alignment:
Q  175 aagtaacataaattctatcaagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaa 252  Q
    |||||||| |||||  | |||||||||||   || |||||||||| |||||| ||| |||||||||||||||||||||    
T  8447379 aagtaacaaaaattaaaacaagtaatatgtggaatagaaactcacattcaacgagtcgaaaccaaactttcaacgtaa 8447456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 838057 - 838005
Alignment:
Q  209 gagaaactcactttcaactagttgaaaccaaactttcaacgtaatccttagcc 261  Q
    |||||||||| ||||||  | |||||||||||||||||| |||||||||||||    
T  838057 gagaaactcattttcaatgaattgaaaccaaactttcaaagtaatccttagcc 838005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 257
Target Start/End: Complemental strand, 10484779 - 10484704
Alignment:
Q  182 ataaattctatcaagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatcctt 257  Q
    |||||||| | |||||||||||   |||||| |||||||||||||  || ||||| | ||||||||||||||||||    
T  10484779 ataaattcaaacaagtaatatgtggaagagacactcactttcaacgtgtcgaaactagactttcaacgtaatcctt 10484704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 463 - 519
Target Start/End: Complemental strand, 837830 - 837774
Alignment:
Q  463 aattgaatcctagactcttgaagtcgaaaatttgtcattttccatataacaaaatgg 519  Q
    |||||||||| |||||||||||  | ||||||  |||||| ||||||||||||||||    
T  837830 aattgaatccaagactcttgaacaccaaaattcttcatttgccatataacaaaatgg 837774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 176 - 317
Target Start/End: Complemental strand, 37935426 - 37935285
Alignment:
Q  176 agtaacataaattctatcaagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatccttagcccacaaccaccgtac 275  Q
    |||||||| ||||||| ||||||||||||  |||||| |||||||||||   ||| | |||||||||||||||||||||||| |||| |||||||| |      
T  37935426 agtaacatgaattctagcaagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaatcctttgcccgcaaccaccatgt 37935327  T
Q  276 tttattagtaatttgaattggctcacctctattttctctgca 317  Q
    | |||||||||||  ||||  ||||| | |||| ||||||||    
T  37935326 tctattagtaattctaattttctcacatttattctctctgca 37935285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 210 - 257
Target Start/End: Original strand, 19645452 - 19645499
Alignment:
Q  210 agaaactcactttcaactagttgaaaccaaactttcaacgtaatcctt 257  Q
    ||||||| ||||||||| ||||||||||||||||||||| ||||||||    
T  19645452 agaaacttactttcaacaagttgaaaccaaactttcaacataatcctt 19645499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 522
Target Start/End: Complemental strand, 25377143 - 25377069
Alignment:
Q  448 taactattttttaaaaattgaatcctagactcttgaagtcgaaaatttgtcattttccatataacaaaatggttt 522  Q
    |||||| |||| || |||||||||| ||||||||||| || |||||   ||||  ||||||||||||||||||||    
T  25377143 taactaattttaaataattgaatccaagactcttgaactccaaaatccttcatcatccatataacaaaatggttt 25377069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 21021047 - 21021087
Alignment:
Q  213 aactcactttcaactagttgaaaccaaactttcaacgtaat 253  Q
    |||| ||||||||| ||||||||||||||||||||| ||||    
T  21021047 aacttactttcaacaagttgaaaccaaactttcaacataat 21021087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University