View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14705_high_4 (Length: 471)
Name: NF14705_high_4
Description: NF14705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14705_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 19 - 465
Target Start/End: Complemental strand, 41075605 - 41075155
Alignment:
| Q |
19 |
agcagactctacccaccttctgttaacggttgcagtcttgcagccgacctactctatcatgtgttagacaaccggataatcacaaaatacagttacagca |
118 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41075605 |
agcaaactctacccaccttctgttaagggttgcagtcttgcagacgacctactctatcatgtgttagacaatcggataatcacaaaatacagttacagca |
41075506 |
T |
|
| Q |
119 |
gatctcaatgtcaaaactaagcacacaccaccagaaatccagaataccaactattggacctaactcctaacaagactcaagctgatactgaaactaagaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41075505 |
gatctcaatgtcaaaactaagcacacaccaccagaaatccagaataccaactattggacctaactcctaacaagactcaagctgatactgaaactaagaa |
41075406 |
T |
|
| Q |
219 |
tgagactaactatcataaagaaacacaggctagcaccccatctaaacaaaatacacacataagtattc----caccacttagaccagacccttaagatag |
314 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
41075405 |
tgagactaactatcgtaaagaaacacaggctaacaccccatctaaacaaaatacacacataagtattcctttcaccacttagaccagacacttaagatag |
41075306 |
T |
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| Q |
315 |
tccaaaaggaaccaggagaactctgatacactagcatcacctccatcgtgaattcaaaggaataggtacctcactcatgtatactccaaaaaacaaccac |
414 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41075305 |
tccaaaaggaatcaggagaactctgatacactagcatcacctccatcgtgaattcaaaggaataggtacctcactcatgtatactccaaaaaacaaccac |
41075206 |
T |
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| Q |
415 |
tcaataaccggataccaatcaaatttgccttcatggtaccaataacctttg |
465 |
Q |
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| T |
41075205 |
tcaataaccggataccaatcaaatttgcctttatggtaccaataacctttg |
41075155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 64 - 455
Target Start/End: Complemental strand, 41087040 - 41086649
Alignment:
| Q |
64 |
gacctactctatcatgtgttagacaaccggataatcacaaaatacagttacagcagatctc--aatgtcaaaactaagcacacaccaccagaaatccaga |
161 |
Q |
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| T |
41087040 |
gacctacactatcatgtgttggacaatcggaca---acacaataaaattacaatagatctcaaaatgtcaaaactaagcacacaccaccagaaatccaga |
41086944 |
T |
|
| Q |
162 |
ataccaactattggacctaactcctaacaagactcaagctgatactgaaactaagaatgagactaactatcataaagaaacacaggctagcaccccatct |
261 |
Q |
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|||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
41086943 |
ataccaaccaccggacctgactcctaacaagactcaagctgatactgaaactaagaatgagactaactatcataaagaaaaacaggctagcaccccaagt |
41086844 |
T |
|
| Q |
262 |
aaacaaaatacacacataagtattccaccacttagaccagacccttaagatagtcc-aaaaggaaccaggagaactctgatacactagcatcacctccat |
360 |
Q |
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| T |
41086843 |
aaacaaaatacacacatcagtattccaccatttacaccagacccttacaatagtccaaaaaggaaccaggagaactctaatacactagcaacacctccat |
41086744 |
T |
|
| Q |
361 |
cgtgaattcaaaggaataggtacctcactcatgtatactccaaaaaacaaccactcaataaccggataccaatcaaatttgccttcatggtacca |
455 |
Q |
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| T |
41086743 |
tatgaattcagaggaataggtacctcactcatgtatactcaaaaaaacaaccaatcaataaccggataccaatcaaatttgccttcatggtacca |
41086649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 263 - 445
Target Start/End: Complemental strand, 48297424 - 48297241
Alignment:
| Q |
263 |
aacaaaatacacacataagtattccaccacttagaccagacccttaagatagtccaa-aaggaaccaggagaactctgatacactagcatcacctccatc |
361 |
Q |
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|||||||||||||||||||||||||||| |||| || ||||||||| ||| ||||| ||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
48297424 |
aacaaaatacacacataagtattccaccgcttacactagacccttacgatggtccaggaaggaactaggagaactctaatacactagcatcacctccatc |
48297325 |
T |
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| Q |
362 |
gtgaattcaaaggaataggtacctcactcatgtatactccaaaaaacaaccactcaataaccggataccaatcaaatttgcctt |
445 |
Q |
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|||||||| |||||||||||||||| ||||||||||||||||||||| ||| ||||||| ||||||||||||||||| |||| |
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| T |
48297324 |
atgaattcataggaataggtacctcaatcatgtatactccaaaaaacagccaatcaataataggataccaatcaaattttcctt |
48297241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 48297514 - 48297462
Alignment:
| Q |
74 |
atcatgtgttagacaaccggataatcacaaaatacagttacagcagatctcaa |
126 |
Q |
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|||||||||||||||| | || ||||| |||||||||||||| |||||||||| |
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| T |
48297514 |
atcatgtgttagacaatcagacaatcataaaatacagttacaacagatctcaa |
48297462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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