View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14705_high_6 (Length: 383)
Name: NF14705_high_6
Description: NF14705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14705_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 158 - 370
Target Start/End: Complemental strand, 32526134 - 32525921
Alignment:
| Q |
158 |
tattgtgatattttgttgacataatgttgtgaattaatgtgacaattgattagattatccttattgattgttatttgattttatgtggtattattagatg |
257 |
Q |
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| T |
32526134 |
tattgtgatattttgttgacataatgttgtgaattaatgtgacaattgattggattatccttattgattgttatttgattttatgtggtattgttagatg |
32526035 |
T |
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| Q |
258 |
ttttacgtaatatctcatttattttatactaatacatgtttatgaaattctccc-ctttgttgtgtttatgattgtttggctcgcccatatgtttgtgaa |
356 |
Q |
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| T |
32526034 |
ttttacgtaatatctcatttattttatactaatacatgtttatgaaattctccctctttgttgtgtttatgattgtttggctcgcccatatgtttgtgaa |
32525935 |
T |
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| Q |
357 |
attgcagtagatac |
370 |
Q |
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|||||||||||||| |
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| T |
32525934 |
attgcagtagatac |
32525921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 154 - 279
Target Start/End: Complemental strand, 32521183 - 32521057
Alignment:
| Q |
154 |
ataatattgtgatattttgttgacataatgttgtgaattaatgtgacaattgattagattatccttattgattgttatttgattttatgtggtattatta |
253 |
Q |
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| T |
32521183 |
ataatattgtgatattttgttgacataatgttgtgaattaacgtgacaattgattggattatccttatcgattgtgatttgattttatgtggtattgtta |
32521084 |
T |
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| Q |
254 |
gatg-ttttacgtaatatctcatttat |
279 |
Q |
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| T |
32521083 |
gaggtttttacgtattatcttatttat |
32521057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 32526207 - 32526141
Alignment:
| Q |
15 |
atataagcaatcatgaacaaagtcgatgaacttaaagaggaattataggtagaaattaattaaagaa |
81 |
Q |
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| T |
32526207 |
atatatgcaatcatgaacaaagtcgatgaactcaaagaggaattataggtagaaattaattaaagaa |
32526141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 32521310 - 32521249
Alignment:
| Q |
14 |
aatataagcaatcatgaacaaagtcgatgaacttaaagaggaattataggtagaaattaatt |
75 |
Q |
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| T |
32521310 |
aatataagcaatcatgaacaaagttgatgaactcaaagaggaattatgggtagaaattaatt |
32521249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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