View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14705_high_9 (Length: 347)
Name: NF14705_high_9
Description: NF14705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14705_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 19 - 265
Target Start/End: Original strand, 48667221 - 48667467
Alignment:
| Q |
19 |
gtgaatttgctgaatgcgttgacagtgagtcggatattgactcgtgaccacttatctctcgccaatgaaggcataccttttggatccgtaacatggatcg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48667221 |
gtgaatttgctgaatgcgttgacagtgagtcggatattgactcgtgatcacttatctctcgccaatgaaggcataccttttggatccgtaacatggatcg |
48667320 |
T |
|
| Q |
119 |
cttatgtcggcatctgttgttttctcgtatgctttgctggtatcatgtccggtctcactcttggtctcatgtctctcagtctcgtcgaccttgaaattct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48667321 |
cttatgtcggcatctgttgttttctcgtatgctttgctggtatcatgtccggtctcactcttggtctcatgtctctcagtctcgtcgaccttgaaattct |
48667420 |
T |
|
| Q |
219 |
tgaacgtagtggttctccttctgagaaaaaacaagccggtacctacc |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48667421 |
tgaacgtagtggttctccttctgagaaaaaacaagccggtacctacc |
48667467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 220
Target Start/End: Original strand, 36722283 - 36722349
Alignment:
| Q |
154 |
gctggtatcatgtccggtctcactcttggtctcatgtctctcagtctcgtcgaccttgaaattcttg |
220 |
Q |
| |
|
|||||| | |||||||| ||||| | ||||||||||||||||||||||| || |||||| |||||| |
|
|
| T |
36722283 |
gctggtttaatgtccggactcaccttaggtctcatgtctctcagtctcgttgatcttgaagttcttg |
36722349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 74 - 259
Target Start/End: Original strand, 16387793 - 16387978
Alignment:
| Q |
74 |
ctctcgccaatgaaggcataccttttggatccgtaacatggatcgcttatgtcggcatctgttgttttctcgtatgctttgctggtatcatgtccggtct |
173 |
Q |
| |
|
|||||||||| ||||||||||||||||| || | ||||||||| ||||| | ||| || || |||||||| || |||||| || ||||||||||||| |
|
|
| T |
16387793 |
ctctcgccaacgaaggcataccttttggttctgcaacatggattgcttacgccggaatatgctgttttcttgttctctttgccggagtcatgtccggtct |
16387892 |
T |
|
| Q |
174 |
cactcttggtctcatgtctctcagtctcgtcgaccttgaaattcttgaacgtagtggttctccttctgagaaaaaacaagccggta |
259 |
Q |
| |
|
||| ||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
16387893 |
cacacttggtctcatgtctctcagtcttgtagacctcgaaattcttgaacgtagtggttctccttctcagaaaaaacaagctggta |
16387978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 52324708 - 52324635
Alignment:
| Q |
145 |
gtatgctttgctggtatcatgtccggtctcactcttggtctcatgtctctcagtctcgtcgaccttgaaattct |
218 |
Q |
| |
|
|||||||| |||||| | ||| | |||||||||||||| ||||||||| | ||||||||||||||||| |||| |
|
|
| T |
52324708 |
gtatgcttcgctggtcttatggctggtctcactcttggactcatgtctttaggtctcgtcgaccttgaagttct |
52324635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University