View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14705_low_1 (Length: 884)
Name: NF14705_low_1
Description: NF14705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14705_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 702; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 702; E-Value: 0
Query Start/End: Original strand, 101 - 866
Target Start/End: Original strand, 40115513 - 40116278
Alignment:
| Q |
101 |
acatgaagaactttatgaaggtggagagtgcttcttttcaatggtaaaattatcttaccagtatgagtaatgggaagtccagtaccatcacctatggtaa |
200 |
Q |
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| T |
40115513 |
acatgaagaactttatgaaggtggagagtgcttcttttcaatggtaaaattatcttaccagtatgagtaatgggaagtccagtaccatcacctatggtaa |
40115612 |
T |
|
| Q |
201 |
ttttgtctgagccatgatagggagcagtaaggtgaagatcatcaagagtattagtgatgtggattgtagcgccggaatcaaggatccaatctggctctcc |
300 |
Q |
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| T |
40115613 |
ttttgtctgagccatgatagggagcagtaaggtgcagatcatcaagagtattagtgatgtggtttgtagcgccggaatcaaggatccaatctggctcacc |
40115712 |
T |
|
| Q |
301 |
cataaaatgagtatgtgtagcagaatgggcagatggacgtggttgatttttggatggataaccatgaagtttgtagcacgttttggcagtgtgtccagat |
400 |
Q |
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| T |
40115713 |
cataaaaggagtatgtgtagcagaatgggcagatggacgtggttgatttttggatggataaccatgaagtttgtagcacgttttggaagtgtgtccagat |
40115812 |
T |
|
| Q |
401 |
ttgtcccagaattgacaagtcgttttcttagactggcctggtgaaacagatctgttgggtgaagagtaattgccatgattaggtgcatagccccgtttgg |
500 |
Q |
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| T |
40115813 |
ttgtcacagaattgacaagtcgttttcttagactggcctggtgaaacagatctgttgggtgaagagtaatttccatgattaggtgcatagccccgtttgg |
40115912 |
T |
|
| Q |
501 |
aagtagcttgtttacctctgtatgcagcatgtgcagtaagtactggagcagattcatcatcccgttgcaggacattttcatagtccacaagtagatcatg |
600 |
Q |
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| T |
40115913 |
aagtagcttgtttacctctgtatgcagcatgtgcagtaagtactggagcagattcatcttcacgttgcagaacattttcatagtccataagtagatcatg |
40116012 |
T |
|
| Q |
601 |
aagctcagcaacggctatgggattctcacgcgtacgaagggcagcagaaacttctttgtactcagatccaagcccattcagagcatgaataaccaagtca |
700 |
Q |
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| T |
40116013 |
aagctcaacaaaggctatgggattctcacgcgtacgaagggcagcagaaacttctttgtactcagatccaagcccattgagagcatgaataaccaagtca |
40116112 |
T |
|
| Q |
701 |
tcatcatcaacaggtttgttaatgacagcaagctcatcagagattgatttaataccttgtaggtattcagaaactgatttggagccctttgttgtacaag |
800 |
Q |
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| T |
40116113 |
tcatcatcaacaggtttgttgatgacagcaagctcatcagagattgatttaataccttgtaggtattcagaaactgatttggagccctttgttgtacgag |
40116212 |
T |
|
| Q |
801 |
acaggcgctccttaagatgcataatgcgtgatctagtcttgctagcaaacattttcttgagggtat |
866 |
Q |
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| T |
40116213 |
acaggcgctccttaagatgcataatgcgtgatctagtcttgctagcaaacattttcttgagggtat |
40116278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 40115390 - 40115287
Alignment:
| Q |
1 |
aaggattgcataaggatggtctctaccacattccaaagccacccaccaccagcttcataacttcactcgccactaatccaccttggcatcatattcttgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | || |
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| T |
40115390 |
aaggattgcataaggatggtctctaccacattccaaagccacccaccaccagcttcataacttcactcgccactactccaccttggcatcatattttagg |
40115291 |
T |
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| Q |
101 |
acat |
104 |
Q |
| |
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|||| |
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|
| T |
40115290 |
acat |
40115287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 653 - 855
Target Start/End: Complemental strand, 3016570 - 3016368
Alignment:
| Q |
653 |
tctttgtactcagatccaagcccattcagagcatgaataaccaagtcatcatcatcaacaggtttgttaatgacagcaagctcatcagagattgatttaa |
752 |
Q |
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|||||| |||| || ||||| ||||| |||||||||| || | ||||||||||||| ||| ||||| |||| ||||| |||||||| |||| ||| | |
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| T |
3016570 |
tctttgaactcggacccaaggccattgggagcatgaatcacgagatcatcatcatcaataggcttgttgatgattgcaagttcatcagaaattgctttga |
3016471 |
T |
|
| Q |
753 |
taccttgtaggtattcagaaactgatttggagccctttgttgtacaagacaggcgctccttaagatgcataatgcgtgatctagtcttgctagcaaacat |
852 |
Q |
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| T |
3016470 |
tggcttggaggtattcagagacggatttggaacctttagaggttcgagttaaccgctctttaagatgcataatgcgagctcttgttttgcttgcaaacat |
3016371 |
T |
|
| Q |
853 |
ttt |
855 |
Q |
| |
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||| |
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| T |
3016370 |
ttt |
3016368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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