View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14705_low_10 (Length: 357)
Name: NF14705_low_10
Description: NF14705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14705_low_10 |
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| [»] scaffold0019 (3 HSPs) |
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Alignment Details
Target: scaffold0019 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 65 - 340
Target Start/End: Complemental strand, 53480 - 53206
Alignment:
| Q |
65 |
aaccgtctcttgtcacagcaaacaccattctgtccattctggcagctgattatgcagttgagaagctttcttgctatgtttctgacgacgcgggtgcact |
164 |
Q |
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| T |
53480 |
aaccgtctcttgtcacagcaaacaccattctgtccattctggcagctgattatgcagttgagaagctttcatgctatgtttctgacgacgcgggtgcact |
53381 |
T |
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| Q |
165 |
tttaacttaaaatttttccttcagaacatttagatgggaaaaatgatttactggacatagcttggtaacttgatcaagaagccaagagaaagcaaactat |
264 |
Q |
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| T |
53380 |
tttaacttaaa-tttttccttcagaacatttagatcggaaaaatgatttactggacatagcttggtaacttgatcaagaagccaagagaaagcaaactat |
53282 |
T |
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| Q |
265 |
atttcacaaacaacaacagacatgcttcataaccagattgcatcggtatttttgtgtgaccctccaatgcaagaac |
340 |
Q |
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| T |
53281 |
atttcacaaacaacaacagacatgcttcataaccagattgcattggtatttttgtgtgaccctccaatgcaagaac |
53206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 174 - 340
Target Start/End: Original strand, 53549 - 53714
Alignment:
| Q |
174 |
aaatttttccttcagaacatttagatgggaaaaatgatttactggacatagcttggtaacttgatcaagaagccaagagaaagcaaactatatttcacaa |
273 |
Q |
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||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
53549 |
aaatttttccttcagaatatttagatcggcaaaatgatttactggacatagcttggtaacttgatcaagaagccaagagaaagcaaaccatatttcaca- |
53647 |
T |
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| Q |
274 |
acaacaacagacatgcttcataaccagattgcatcggtatttt--tgtgtgaccctccaatgcaagaac |
340 |
Q |
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| T |
53648 |
--aacaacagacatgctccattaccagattgcatcggtatttttgtgtgtgaccctccaatgcaagaac |
53714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 54048 - 53986
Alignment:
| Q |
1 |
tcactatcaacaacttctgatgattttgttgatccaactgagttgatgagcgcacaatggaaa |
63 |
Q |
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| T |
54048 |
tcactatcagcaacttctgatgattttgttgatccaactgagttgatgagcgcacaatggaaa |
53986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 174 - 340
Target Start/End: Original strand, 29919266 - 29919431
Alignment:
| Q |
174 |
aaatttttccttcagaacatttagatgggaaaaatgatttactggacatagcttggtaacttgatcaagaagccaagagaaagcaaactatatttcacaa |
273 |
Q |
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| T |
29919266 |
aaatttttccttcagaacattaagatctgtagaacgatttactgggcatagcttgggcagttgatcaagaagccaagagaaagcaaaccataattcaca- |
29919364 |
T |
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| Q |
274 |
acaacaacagacatgcttcataaccagattgcatcggtatttt--tgtgtgaccctccaatgcaagaac |
340 |
Q |
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| T |
29919365 |
--aactatagacatgccccataaccagactgcatcggtatttttgtgtgtgaccctccagtgcaggaac |
29919431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 60 - 172
Target Start/End: Complemental strand, 29919185 - 29919073
Alignment:
| Q |
60 |
gaaagaaccgtctcttgtcacagcaaacaccattctgtccattctggcagctgattatgcagttgagaagctttcttgctatgtttctgacgacgcgggt |
159 |
Q |
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| T |
29919185 |
gaaagaaccaccacttgtcacagcaaacaccatcttgtcgattttagctgctgactatccagttgagaagctttcttgctatgtttctgatgatgggggt |
29919086 |
T |
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| Q |
160 |
gcacttttaactt |
172 |
Q |
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| T |
29919085 |
gcacttttaactt |
29919073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 178 - 340
Target Start/End: Complemental strand, 47917965 - 47917804
Alignment:
| Q |
178 |
ttttccttcagaacatttagatgggaaaaatgatttactggacatagcttggtaacttgatcaagaagccaagagaaagcaaactatatttcacaaacaa |
277 |
Q |
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||||||||||||||||| || | | | |||||||||| || |||||||||| || |||||||||||||||||||||||||||| || |||||| || |
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| T |
47917965 |
ttttccttcagaacattaaggtctgcagaatgatttaccgggcatagcttgggaagttgatcaagaagccaagagaaagcaaaccatgattcaca---aa |
47917869 |
T |
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| Q |
278 |
caacagacatgcttcataaccagattgcatcggtatttt--tgtgtgaccctccaatgcaagaac |
340 |
Q |
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| T |
47917868 |
ctatagacattccccataaccagactgcatcagtatttttgtgtgtgaccctccaacgcaggaac |
47917804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 172
Target Start/End: Original strand, 47918050 - 47918162
Alignment:
| Q |
60 |
gaaagaaccgtctcttgtcacagcaaacaccattctgtccattctggcagctgattatgcagttgagaagctttcttgctatgtttctgacgacgcgggt |
159 |
Q |
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||||||||| | ||||||||||||||||| || |||| || | || ||||| ||| ||||||||||||||||||||||||||||||| || | ||| |
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| T |
47918050 |
gaaagaaccaccacttgtcacagcaaacactatcttgtcgatcttagctgctgactatccagttgagaagctttcttgctatgtttctgatgatggaggt |
47918149 |
T |
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| Q |
160 |
gcacttttaactt |
172 |
Q |
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| T |
47918150 |
gcacttttaactt |
47918162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 277
Target Start/End: Original strand, 15419842 - 15419882
Alignment:
| Q |
237 |
atcaagaagccaagagaaagcaaactatatttcacaaacaa |
277 |
Q |
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| T |
15419842 |
atcaagaagccatgagaaagcaaaccaaatttcacaaacaa |
15419882 |
T |
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