View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14705_low_19 (Length: 293)
Name: NF14705_low_19
Description: NF14705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14705_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 3857969 - 3857694
Alignment:
| Q |
1 |
ctctttgtactagtcccaaatgtttgttgggtagtaggaattggatcatataaaaaccataagctaatatactttaccttatctacatttgaatgtagag |
100 |
Q |
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| T |
3857969 |
ctctttgtactagtcccaaatgtttgttgggtagtaggaattggatcatataaaaaccataagctaatatactttaccttatctacatttgaatgcagag |
3857870 |
T |
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| Q |
101 |
agatccaccttttatggtctaaattaactatatcaacatttgtaaagcagtcaatttcattggtagtgataccatcaactgcacacaaaattgttcaaag |
200 |
Q |
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| T |
3857869 |
agatccaccttttatggtctaaattaactatatcaacatttgtaaagcagtcaatttcattggtagtaataccatcaactgcacacaaaattgttcaaag |
3857770 |
T |
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| Q |
201 |
agaccttagcccaaattgttatattttcaatctaattgnnnnnnnnctgagatatcaaacatgtcaaaccaaatac |
276 |
Q |
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| T |
3857769 |
agaccttagcccaaattgttatattttcaatctaattgaaaaaaaactgagatatcaaacatgtcaaaccaaatac |
3857694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 3866726 - 3866451
Alignment:
| Q |
1 |
ctctttgtactagtcccaaatgtttgttgggtagtaggaattggatcatataaaaaccataagctaatatactttaccttatctacatttgaatgtagag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3866726 |
ctctttgtactagtcccaaatgtttgttgggtagtaggaattggatcatataaaaaccataagctaatatactttaccttatctacatttgaatgcagag |
3866627 |
T |
|
| Q |
101 |
agatccaccttttatggtctaaattaactatatcaacatttgtaaagcagtcaatttcattggtagtgataccatcaactgcacacaaaattgttcaaag |
200 |
Q |
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| T |
3866626 |
agatccaccttttatggtctaaattaactatatcaacatttgtaaagcagtcaatttcattggtagtaataccatcaactgcacacaaaattgttcaaag |
3866527 |
T |
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| Q |
201 |
agaccttagcccaaattgttatattttcaatctaattgnnnnnnnnctgagatatcaaacatgtcaaaccaaatac |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3866526 |
agaccttagcccaaattgttatattttcaatctaattgaaaaaaaactgagatatcaaacatgtcaaaccaaatac |
3866451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 5440182 - 5440237
Alignment:
| Q |
41 |
ttggatcatataaaaaccataagctaatatactttaccttatctacatttgaatgta |
97 |
Q |
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||||||||||||||| |||||||||||| || |||||||| |||| |||||||||| |
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| T |
5440182 |
ttggatcatataaaa-ccataagctaatttaatttaccttgtctaagtttgaatgta |
5440237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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