View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14705_low_2 (Length: 616)
Name: NF14705_low_2
Description: NF14705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14705_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 576; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 1 - 609
Target Start/End: Original strand, 39981726 - 39982334
Alignment:
| Q |
1 |
tgatactaggctcaaaatattctttgacatgtaattctttgtttagttaatgtaagcgtcaaatatttgttgaatgctccataaacatatcaccaacatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
39981726 |
tgatactaggctcaaaatattctttgacatgtaattctttgtttagttaatgtaagcgtcaaatatttgttgaatgctccataaaaatatcaccaacatt |
39981825 |
T |
|
| Q |
101 |
gattttgattacagggttgacaaagatgcagatggaagaatcactgaggaagagataaaaaatgtatggtacttttaatttaacactaaataatctaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39981826 |
gattttgattacagggttgacaaagatgcagatggaagaatcaccgaggaagagataaaaaatgtatggtacttttaatttaacactaaataatctaaat |
39981925 |
T |
|
| Q |
201 |
atgagttgcacagtatgcactgaactttatttttggtgatttttcaacagtnnnnnnnttagtaaagtagtttttaatcagccaatttttgcctgagtga |
300 |
Q |
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| T |
39981926 |
atgagttgcacagtatgcactgaactttatttttggtgatttttcaacagtaaaaaaattagtaaagtagtttttaatcagccaatttttgcctgagtga |
39982025 |
T |
|
| Q |
301 |
ttttgtgttatttgatcatattttatgtaattctgcttcagattatatgcctgagtgccactgccaacaaactgtcaaatatccagaaacaagcagagga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39982026 |
ttttgtgttatttgatcatattttatgtaattctgcttcagattatatgcctgagtgccactgccaacaaactgtcaaatatccagaaacaagcagagga |
39982125 |
T |
|
| Q |
401 |
atatgcggctttgatcatggaagaactagacccggatgacacaggatatatcttggtaattaaatgacagtatctaaactgtagtctccagattaaaata |
500 |
Q |
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| T |
39982126 |
atatgcggctttgatcatggaagaactagacccggatgacacaggatatatcttggtaattaaatgacagtatctaaattgtagtctccagattaaaata |
39982225 |
T |
|
| Q |
501 |
actatttcaatattatagaattgtgaccttactcatttgaccatattttaacagataggcaatctcgagactctcttattacatggaccagaagagacta |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39982226 |
actatttcaatattatagaattgtgaccttactcatttgaccatattttaacagataggcaatctcgagactctcttattacatggaccagaagagacta |
39982325 |
T |
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| Q |
601 |
caaggggag |
609 |
Q |
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||||||||| |
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| T |
39982326 |
caaggggag |
39982334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 7e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 337 - 462
Target Start/End: Original strand, 44913683 - 44913808
Alignment:
| Q |
337 |
ttcagattatatgcctgagtgccactgccaacaaactgtcaaatatccagaaacaagcagaggaatatgcggctttgatcatggaagaactagacccgga |
436 |
Q |
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|||||||||| ||||| ||||||||| | |||||||| ||||| || ||||| || |||||||||||||| |||||||||||||||||||||||||| || |
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| T |
44913683 |
ttcagattatttgccttagtgccactacaaacaaactctcaaacatacagaagcaggcagaggaatatgctgctttgatcatggaagaactagaccctga |
44913782 |
T |
|
| Q |
437 |
tgacacaggatatatcttggtaatta |
462 |
Q |
| |
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||| || |||| |||| ||||||||| |
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| T |
44913783 |
tgatactggatttatcatggtaatta |
44913808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 44883791 - 44883831
Alignment:
| Q |
1 |
tgatactaggctcaaaatattctttgacatgtaattctttg |
41 |
Q |
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||||||||||||||||| |||||||||||||| ||| |||| |
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| T |
44883791 |
tgatactaggctcaaaacattctttgacatgtgattatttg |
44883831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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