View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14705_low_20 (Length: 288)
Name: NF14705_low_20
Description: NF14705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14705_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 15 - 278
Target Start/End: Complemental strand, 6604126 - 6603863
Alignment:
| Q |
15 |
catttcacctccacatgaccatctttgaaaccagtaacattgccaatacaggacaggcgacagttacctaccgagttattcgaataactgatttggtaca |
114 |
Q |
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| T |
6604126 |
catttcacctccacatgaccatctttgaaaccagtaacattgccaatacaggacaggcgacagttacctaccgagttattcggataactgatttggtaca |
6604027 |
T |
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| Q |
115 |
ggtttttcaggggagcttccacattcaagtcactcattgaatttgcattgtatttttcagctaggtaaccagactgtttttgagccgccttgaacacaat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6604026 |
ggtttttcaggggagcttccacattcaagtcactcattgaatttgcattgtatttttcagctaggtaaccagactgtttttgagccgccttgaacacaat |
6603927 |
T |
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| Q |
215 |
atcgccaaaacaacagaaaaaatatgggtgctcaacaaattcgtaggcactcacagtttccgcc |
278 |
Q |
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| T |
6603926 |
atcgccaaaacaacaggaaaaatatgggtgctcaacaaattcgtaggcactcacagtttccgcc |
6603863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 171 - 275
Target Start/End: Complemental strand, 35441162 - 35441058
Alignment:
| Q |
171 |
tcagctaggtaaccagactgtttttgagccgccttgaacacaatatcgccaaaacaacagaaaaaatatgggtgctcaacaaattcgtaggcactcacag |
270 |
Q |
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|||||| |||||||| | |||||||||||||||||||||| |||||| ||| || ||||| | ||| |||||||||||| | ||||||||||||||||| |
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| T |
35441162 |
tcagcttggtaaccaaattgtttttgagccgccttgaacataatatcaccataaaaacaggagtaatctgggtgctcaactagttcgtaggcactcacag |
35441063 |
T |
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| Q |
271 |
tttcc |
275 |
Q |
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||||| |
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| T |
35441062 |
tttcc |
35441058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 35441317 - 35441268
Alignment:
| Q |
16 |
atttcacctccacatgaccatctttgaaaccagtaacattgccaatacag |
65 |
Q |
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||||||||||||||| |||||||||||||||| ||||| |||||| |||| |
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| T |
35441317 |
atttcacctccacatcaccatctttgaaaccaataacagtgccaacacag |
35441268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 276
Target Start/End: Original strand, 3699417 - 3699678
Alignment:
| Q |
15 |
catttcacctccacatgaccatctttgaaaccagtaacattgccaatacaggacaggcgacagttacctaccgagttattcgaataactgatttggtaca |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||| |||||| ||||||||||||||||| |
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| T |
3699417 |
catttcacctccacatgaccatctttgaaaccagtaacattgccaatgcaggacaggtgacagttacctacagagctattcggataactgatttggtaca |
3699516 |
T |
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| Q |
115 |
ggtttttcaggggagcttccacattcaagtcactcattgaatttgcattgtatttttcagctaggtaaccagactgtttttgagccgccttgaacacaat |
214 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
3699517 |
ggtttttcagaggagcttccacattcaagtcactcattgaatttgcattatatttttcagctaggtaaccgggctgtttttgagccgccttgaacacaat |
3699616 |
T |
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| Q |
215 |
atcgccaaaacaacagaaaaaatatgggtgctcaacaaattcgtaggcactcacagtttccg |
276 |
Q |
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|||||||||||||||| |||||| |||||||||||||| ||| ||||||||||||||||||| |
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| T |
3699617 |
atcgccaaaacaacaggaaaaatctgggtgctcaacaagttcataggcactcacagtttccg |
3699678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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