View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14705_low_23 (Length: 270)
Name: NF14705_low_23
Description: NF14705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14705_low_23 |
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| [»] scaffold1234 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 89 - 254
Target Start/End: Complemental strand, 26497128 - 26496963
Alignment:
| Q |
89 |
caagcggtatttaaattaaggaaaatcctgaattaacatttcaatagaaggctcagtttaaatttgtgtggaggaatcatttatgttagttaaagtgtaa |
188 |
Q |
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| T |
26497128 |
caagcagtatttaaattaaggaaaatcctgaattaacatttcaatagaaggctcagtttaaatatgtgtggaggaatcatttatgttagttaaagtgtaa |
26497029 |
T |
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| Q |
189 |
gccatcagtggatatataagagcacacacacaacaaattggtccgaatgaataagaatattaatag |
254 |
Q |
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| T |
26497028 |
gccatcagtggatagataagagcacacacacaacaaattggtccgaattaataagaatattaatag |
26496963 |
T |
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Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 100 - 231
Target Start/End: Original strand, 5770433 - 5770564
Alignment:
| Q |
100 |
taaattaaggaaaatcctgaattaacatttcaatagaaggctcagtttaaatttgtgtggaggaatcatttatgttagttaaagtgtaagccatcagtgg |
199 |
Q |
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| T |
5770433 |
taaattgaggaaaatcctgaagtaacattccaatagaaggatcaacctaaagtttggtggagaaatcatttatgttagttaaagtggcagccatcagcgg |
5770532 |
T |
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| Q |
200 |
atatataagagcacacacacaacaaattggtc |
231 |
Q |
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| T |
5770533 |
ataggtagaagcacatacacaacaaattggtc |
5770564 |
T |
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Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 100 - 231
Target Start/End: Complemental strand, 33867616 - 33867485
Alignment:
| Q |
100 |
taaattaaggaaaatcctgaattaacatttcaatagaaggctcagtttaaatttgtgtggaggaatcatttatgttagttaaagtgtaagccatcagtgg |
199 |
Q |
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| T |
33867616 |
taaattgaggaaaatcctgaagtaacattccaatagaaggatcaacctaaagtttggtggagaaatcatttatgttagttaaagtggcagccatcagcgg |
33867517 |
T |
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| Q |
200 |
atatataagagcacacacacaacaaattggtc |
231 |
Q |
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| T |
33867516 |
ataggtagaagcacatacacaacaaattggtc |
33867485 |
T |
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Target: scaffold1234 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold1234
Description:
Target: scaffold1234; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 100 - 231
Target Start/End: Complemental strand, 161 - 30
Alignment:
| Q |
100 |
taaattaaggaaaatcctgaattaacatttcaatagaaggctcagtttaaatttgtgtggaggaatcatttatgttagttaaagtgtaagccatcagtgg |
199 |
Q |
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| T |
161 |
taaattgaggaaaatcatgaagtaacattccaatagaaggatcaacctaaagtttggtggagaaatcatttatgttagttaaagtggcagccatcagcgg |
62 |
T |
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| Q |
200 |
atatataagagcacacacacaacaaattggtc |
231 |
Q |
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| T |
61 |
ataggtagaagcacatacacaacaaattggtc |
30 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 100 - 231
Target Start/End: Original strand, 23214122 - 23214253
Alignment:
| Q |
100 |
taaattaaggaaaatcctgaattaacatttcaatagaaggctcagtttaaatttgtgtggaggaatcatttatgttagttaaagtgtaagccatcagtgg |
199 |
Q |
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| T |
23214122 |
taaattgaggaaaatcatgaagtaacattccaatagaaggatcaacctaaagtttggtggagaaatcatttatgttagttaaagtggcagccatcagcgg |
23214221 |
T |
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| Q |
200 |
atatataagagcacacacacaacaaattggtc |
231 |
Q |
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| T |
23214222 |
ataggtagaagcacatacacaacaaattggtc |
23214253 |
T |
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