View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14705_low_25 (Length: 262)
Name: NF14705_low_25
Description: NF14705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14705_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 9 - 121
Target Start/End: Complemental strand, 9023878 - 9023766
Alignment:
| Q |
9 |
aatatcattgtttatatattatacacaaaaatgaataagcataacgctaacatgacaataataattactcgacaaggatagtaaaatcttccttatttct |
108 |
Q |
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| T |
9023878 |
aatatcattgtttatatattatacacaaaaatgaataagcataacgctaacatgacaataataattactcgacaaggatagtaaagtcttccttattttt |
9023779 |
T |
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| Q |
109 |
ccttaacacctac |
121 |
Q |
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||||||||||||| |
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| T |
9023778 |
ccttaacacctac |
9023766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 9023727 - 9023644
Alignment:
| Q |
160 |
ctctcactctcacgctctcaagtatacatagattaactcatatcaatcatcactataccgcaaaccaacattatgtagcagaac |
243 |
Q |
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| T |
9023727 |
ctctcactctcacgctctcaagtatacatagattaactcatatcaatcatcactataccgcaaaccaacattatgtagcagaac |
9023644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 8747549 - 8747475
Alignment:
| Q |
9 |
aatatcattgtttatatattatacacaaaaatgaataagcataacgctaacatgacaataataattactcgacaa |
83 |
Q |
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| T |
8747549 |
aatatcattgtttatatattatacacaaaaacaaataagcataacgcttgcatgacaataataattactcgacaa |
8747475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 9035042 - 9034969
Alignment:
| Q |
13 |
tcattgtttatatattatacacaaaaatgaataagcataacgctaacatgacaataataattactcgacaaggatagtaaa |
93 |
Q |
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| T |
9035042 |
tcattgtttatatattatacacaaaaaagaataagca-------aacatgacaataataattactcgacaaagatagtaaa |
9034969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 9029537 - 9029465
Alignment:
| Q |
14 |
cattgtttatatattatacacaaaaatgaataagcataacgctaacatgacaataataattactcgacaaggatagtaaa |
93 |
Q |
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|||||||||| |||||||||||| |||||||| ||| |||||||||||||||||||||| |||| ||||||||| |
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| T |
9029537 |
cattgtttatgtattatacacaataatgaatacgca-------aacatgacaataataattactcaacaacgatagtaaa |
9029465 |
T |
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