View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14705_low_26 (Length: 257)

Name: NF14705_low_26
Description: NF14705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14705_low_26
NF14705_low_26
[»] chr3 (5 HSPs)
chr3 (13-243)||(8332877-8333105)
chr3 (89-169)||(8341395-8341479)
chr3 (13-81)||(8341950-8342018)
chr3 (202-243)||(8341325-8341366)
chr3 (23-76)||(26727551-26727604)
[»] chr2 (4 HSPs)
chr2 (101-239)||(29229172-29229315)
chr2 (101-239)||(29342472-29342615)
chr2 (26-78)||(29228597-29228649)
chr2 (26-78)||(29341896-29341948)
[»] chr1 (3 HSPs)
chr1 (23-75)||(44785757-44785809)
chr1 (26-74)||(44612085-44612133)
chr1 (31-78)||(44144872-44144919)
[»] scaffold0061 (1 HSPs)
scaffold0061 (26-78)||(29864-29916)
[»] scaffold0017 (1 HSPs)
scaffold0017 (26-78)||(168876-168928)
[»] chr5 (9 HSPs)
chr5 (23-63)||(29507656-29507696)
chr5 (23-63)||(29507728-29507768)
chr5 (25-63)||(29507874-29507912)
chr5 (25-63)||(29507946-29507984)
chr5 (25-63)||(29508090-29508128)
chr5 (22-60)||(29508159-29508197)
chr5 (23-63)||(29507584-29507624)
chr5 (23-63)||(29507800-29507840)
chr5 (23-63)||(29508016-29508056)


Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 243
Target Start/End: Complemental strand, 8333105 - 8332877
Alignment:
Q  13 atcatcaagtctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatcttcccctcttaagagttatacaaacatacacacatatag 112  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||    
T  8333105 atcattaagtctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatctttccctcttaagagttatacaaaca--cacacatatag 8333008  T
Q  113 aaaattgtgtttaaggaatgtgtattttcctgcttccttcttatcttaaacctgtaattttatcgtccatccatttaatgttcaaatcttattcactaac 212  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||    
T  8333007 aaaattgtgtttaaggaaggtgtattttcctgcttccttcttatcttaaacctgtaattttatcgtccatccatttaatgttcaaattatattcattaac 8332908  T
Q  213 aaagatattcttttgtcttgtatgaaggaaa 243  Q
    ||||||| ||||||||||| |||||||||||    
T  8332907 aaagataatcttttgtcttatatgaaggaaa 8332877  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 89 - 169
Target Start/End: Complemental strand, 8341479 - 8341395
Alignment:
Q  89 ttatacaaacatacacacatata----gaaaattgtgtttaaggaatgtgtattttcctgcttccttcttatcttaaacctgtaa 169  Q
    ||||||||||| |||||||||||    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8341479 ttatacaaacacacacacatatatatagaaaattgtgtttaaggaaggtgtattttcctgcttccttcttatcttaaacctgtaa 8341395  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 8342018 - 8341950
Alignment:
Q  13 atcatcaagtctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatcttcccctc 81  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8342018 atcattaagactgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatctttccctc 8341950  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 8341366 - 8341325
Alignment:
Q  202 tattcactaacaaagatattcttttgtcttgtatgaaggaaa 243  Q
    |||||||||||||||||| ||||||||||| |||||||||||    
T  8341366 tattcactaacaaagataatcttttgtcttatatgaaggaaa 8341325  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 26727604 - 26727551
Alignment:
Q  23 ctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatcttc 76  Q
    ||||||| |||||||||||| |||||||| || |||||||||| ||||||||||    
T  26727604 ctgagatcaaggtgttgcaactgtgagagttttccaagttgagaaggaatcttc 26727551  T

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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 101 - 239
Target Start/End: Original strand, 29229172 - 29229315
Alignment:
Q  101 acacacatatagaaaattgtgtttaaggaa--tgtgtattttcctgcttccttcttatcttaaacctgtaattttatcgtccatccatttaatgttcaaa 198  Q
    ||||||||| | | ||| ||||||||||||  ||||||||||||||||||||||||||  | |||||||||||||||||||||| |||||||||||||||    
T  29229172 acacacatacaaagaatcgtgtttaaggaaggtgtgtattttcctgcttccttcttattgttaacctgtaattttatcgtccattcatttaatgttcaaa 29229271  T
Q  199 ---tcttattcactaacaaagatattcttttgtcttgtatgaag 239  Q
       |  ||||||||  |||||||| ||||||||||| |||||||    
T  29229272 aaattatattcactctcaaagataatcttttgtcttttatgaag 29229315  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 101 - 239
Target Start/End: Original strand, 29342472 - 29342615
Alignment:
Q  101 acacacatatagaaaattgtgtttaaggaa--tgtgtattttcctgcttccttcttatcttaaacctgtaattttatcgtccatccatttaatgttcaaa 198  Q
    ||||||||| | | ||| ||||||||||||  ||||||||||||||||||||||||||  | |||||||||||||||||||||| |||||||||||||||    
T  29342472 acacacatacaaagaatcgtgtttaaggaaggtgtgtattttcctgcttccttcttattgttaacctgtaattttatcgtccattcatttaatgttcaaa 29342571  T
Q  199 ---tcttattcactaacaaagatattcttttgtcttgtatgaag 239  Q
       |  ||||||||  |||||||| ||||||||||| |||||||    
T  29342572 aaattatattcactctcaaagataatcttttgtcttttatgaag 29342615  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 29228597 - 29228649
Alignment:
Q  26 agattaaggtgttgcaattgtgagagattcccaagttgagtaggaatcttccc 78  Q
    |||| |||||||||||||||||||||||| |||||||||| ||||||||||||    
T  29228597 agatcaaggtgttgcaattgtgagagatttccaagttgagaaggaatcttccc 29228649  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 29341896 - 29341948
Alignment:
Q  26 agattaaggtgttgcaattgtgagagattcccaagttgagtaggaatcttccc 78  Q
    |||| |||||||||||||||||||||||| |||||||||| ||||||||||||    
T  29341896 agatcaaggtgttgcaattgtgagagatttccaagttgagaaggaatcttccc 29341948  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 44785757 - 44785809
Alignment:
Q  23 ctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatctt 75  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  44785757 ctgagatcaaggtgtcgcaattgtgagagattcccaagttgagtaggaatctt 44785809  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 44612133 - 44612085
Alignment:
Q  26 agattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct 74  Q
    |||| ||||||| ||||||||||||||||||||||||||| ||||||||    
T  44612133 agatcaaggtgtcgcaattgtgagagattcccaagttgagaaggaatct 44612085  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 44144919 - 44144872
Alignment:
Q  31 aaggtgttgcaattgtgagagattcccaagttgagtaggaatcttccc 78  Q
    ||||||| ||||| ||||||||||||||||||||| ||||||||||||    
T  44144919 aaggtgtcgcaatcgtgagagattcccaagttgagcaggaatcttccc 44144872  T

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Target: scaffold0061 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 29864 - 29916
Alignment:
Q  26 agattaaggtgttgcaattgtgagagattcccaagttgagtaggaatcttccc 78  Q
    |||| ||| ||| |||||||||| ||||||||||||||| |||||||||||||    
T  29864 agatcaagatgtcgcaattgtgatagattcccaagttgaataggaatcttccc 29916  T

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Target: scaffold0017 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 168928 - 168876
Alignment:
Q  26 agattaaggtgttgcaattgtgagagattcccaagttgagtaggaatcttccc 78  Q
    |||| ||| ||| |||||||||| ||||||||||||||| |||||||||||||    
T  168928 agatcaagatgtcgcaattgtgatagattcccaagttgaataggaatcttccc 168876  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 29507656 - 29507696
Alignment:
Q  23 ctgagattaaggtgttgcaattgtgagagattcccaagttg 63  Q
    ||||||| |||||||||||||||||||||||| ||||||||    
T  29507656 ctgagatcaaggtgttgcaattgtgagagatttccaagttg 29507696  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 29507728 - 29507768
Alignment:
Q  23 ctgagattaaggtgttgcaattgtgagagattcccaagttg 63  Q
    ||||||| |||||||||||||||||||||||| ||||||||    
T  29507728 ctgagatcaaggtgttgcaattgtgagagatttccaagttg 29507768  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 29507874 - 29507912
Alignment:
Q  25 gagattaaggtgttgcaattgtgagagattcccaagttg 63  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  29507874 gagatcaaggtgttgcaattgtgagagatttccaagttg 29507912  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 29507946 - 29507984
Alignment:
Q  25 gagattaaggtgttgcaattgtgagagattcccaagttg 63  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  29507946 gagatcaaggtgttgcaattgtgagagatttccaagttg 29507984  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 29508090 - 29508128
Alignment:
Q  25 gagattaaggtgttgcaattgtgagagattcccaagttg 63  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  29508090 gagatcaaggtgttgcaattgtgagagatttccaagttg 29508128  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 29508159 - 29508197
Alignment:
Q  22 tctgagattaaggtgttgcaattgtgagagattcccaag 60  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  29508159 tctgagatcaaggtgttgcaattgtgagagatttccaag 29508197  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 29507584 - 29507624
Alignment:
Q  23 ctgagattaaggtgttgcaattgtgagagattcccaagttg 63  Q
    ||||||| ||||||||| |||||||||||||| ||||||||    
T  29507584 ctgagatcaaggtgttgtaattgtgagagatttccaagttg 29507624  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 29507800 - 29507840
Alignment:
Q  23 ctgagattaaggtgttgcaattgtgagagattcccaagttg 63  Q
    ||||||| ||| |||||||||||||||||||| ||||||||    
T  29507800 ctgagatcaagatgttgcaattgtgagagatttccaagttg 29507840  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 29508016 - 29508056
Alignment:
Q  23 ctgagattaaggtgttgcaattgtgagagattcccaagttg 63  Q
    ||||||| ||| |||||||||||||||||||| ||||||||    
T  29508016 ctgagatcaagatgttgcaattgtgagagatttccaagttg 29508056  T

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