View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14705_low_27 (Length: 256)
Name: NF14705_low_27
Description: NF14705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14705_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 38136062 - 38136300
Alignment:
| Q |
1 |
atgctatttccattcatgacgaagacagagaatttcgctactcttggatgagctgctcctaattcattgctaactcgcacactgaaatcttagaatgtac |
100 |
Q |
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| T |
38136062 |
atgctatttccattcacgacgaagacagagaatttcgctactcttggatgagctgctcctaattcattgctaactcgcacactgaaatcatagaatgtac |
38136161 |
T |
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| Q |
101 |
ttttacatgtttgtatggaagttgtttaaatgaaaaacattgtttttgacaattgtcgcaaaccttgctgctgcaccaaggcccaacataacttgcatat |
200 |
Q |
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| T |
38136162 |
ttttacatgtttgtatggaagttgtttaaatgaaaaacattgtttttgacaattgtcgcaaaccttgctgctgcaccaaggcccaacataacttgcatat |
38136261 |
T |
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| Q |
201 |
cccagtttaagtaattcatgctgaaaatattagtgcatt |
239 |
Q |
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| T |
38136262 |
cccagtttaagtaattcatgctgaaaatactagtgcatt |
38136300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 39312623 - 39312396
Alignment:
| Q |
1 |
atgctatttccattcatgacgaagacagagaatttcgctactcttggatgagctgctcctaattcattgctaactcgcacactgaaatcttagaatgtac |
100 |
Q |
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| T |
39312623 |
atgctatttgcattcacgacgaagacagaaaattttgctactcttggatgatctgctcctaactc--tgctaactcgcaccctgaaatcataggatctac |
39312526 |
T |
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| Q |
101 |
ttttac-atgtttgtatggaagttgtttaaatgaaaaacattgtttttgacaattgtcgcaaaccttgctgctgcaccaaggcccaacataacttgcata |
199 |
Q |
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| T |
39312525 |
ttttaatatgtttgtgtggaagttgtttaaatgaaaagcattgtttttgtcgattgtcactaaccttgctgctgcaccaaggcccaacataacttgcata |
39312426 |
T |
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| Q |
200 |
tcccagtttaagtaattcatgctgaaaata |
229 |
Q |
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| T |
39312425 |
tcccagtctaagtaattcatgctgaaaata |
39312396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 4 - 228
Target Start/End: Complemental strand, 39317076 - 39316854
Alignment:
| Q |
4 |
ctatttccattcatgacgaagacagagaatttcgctactcttggatgagctgctcctaattcattgctaactcgcacactgaaatcttagaatgtacttt |
103 |
Q |
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| T |
39317076 |
ctattcccattcacgacgaagatggcaaattttgctactcttggatgagctgctcctaattcattgctaattcgcacactgaaattacaggacctacttt |
39316977 |
T |
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| Q |
104 |
tacatgtttgtatggaagttgtttaaatgaaaaacattgtttttga-caattgtcgcaaaccttgctgctgcaccaaggcccaacataacttgcatatcc |
202 |
Q |
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| T |
39316976 |
ta-atataagt--gaaaattgtctaaatagaacacattgtttttggtcaattgtcactaacctggctgctgcaccaaggcccaacatgacttgcatatcc |
39316880 |
T |
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| Q |
203 |
cagtttaagtaattcatgctgaaaat |
228 |
Q |
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| T |
39316879 |
cagtttaagtaattcatgctgaaaat |
39316854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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