View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14705_low_3 (Length: 615)
Name: NF14705_low_3
Description: NF14705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14705_low_3 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 451; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 19 - 615
Target Start/End: Complemental strand, 43131715 - 43131142
Alignment:
| Q |
19 |
atagttccactccacttaaacatagtagccagtgaatgtaaatcctctgccaactatctcacccccacaataccaaagataacactcaagtccgaataaa |
118 |
Q |
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| T |
43131715 |
atagttccactccacttaaacatagtagccagtaaatgtaaatcctctgccaactatctcacccccacaataccaaagataacactcaagtccgaataaa |
43131616 |
T |
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| Q |
119 |
gcagctgtgccaattttctccatgtttaactcattcatgttattcattatgttcttagcagagtccaattccttccagaatgaatcgtaacgatgaggaa |
218 |
Q |
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| T |
43131615 |
gcagctgtgccaattttctccatgtttaactcattcatgttattcattatgttcttagcagagtccaattccttccagaatgaatcgtaacgatgaggaa |
43131516 |
T |
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| Q |
219 |
tactgcnnnnnnnnnnnnnnnntaacaagttcaataaatatttcctccgtctcattataagtgtctcattttagttgtacgtaattcattcatatatata |
318 |
Q |
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| T |
43131515 |
tactg-------taaaacaaaataacaagttcaatatatatttcctccgtctcatt--------------ttagttgtacgtaattcattcatatatat- |
43131438 |
T |
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| Q |
319 |
tgcaacaaacctggcaagtcgagtatagaacaattgtttggctagtgattggcacttttcaatagtaggtggttcttggacatagtgtttgttcctctcc |
418 |
Q |
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| T |
43131437 |
-gcaacaaacctggcaagtcgagtatagaacaattgtttggccagtgattgacacttttcaatagtaggtggttcttggacatggtgtttgttcctctcc |
43131339 |
T |
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| Q |
419 |
atcaacagcttgaaatgtgaatttatatggtttgccacttctgctgatgcttgagtcgcctttgattgcagctcaggaatctttgatgtcatggatttac |
518 |
Q |
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| T |
43131338 |
atcaacagcttgaaatgtgaatttatatggtttgccacttctgctgatgcttgagtcgcctttgattgcagctcaggaatctttgatgtcatggatttac |
43131239 |
T |
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| Q |
519 |
tatacaaaattatattaagatatataaggttcaaaaatttattcaaatctcatcattctgtttttcttttaaatttccacacacaaaccttgctgta |
615 |
Q |
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| T |
43131238 |
tatacaaaattatattaagatatatatgggtcaaaaatttattcaaatctcatcattctgtttttcttttaaatttccacacacaaaccttgttgta |
43131142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 527
Target Start/End: Complemental strand, 43130508 - 43130447
Alignment:
| Q |
466 |
tgcttgagtcgcctttgattgcagctcaggaatctttgatgtcatggatttactatacaaaa |
527 |
Q |
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| T |
43130508 |
tgcttgagtcacctttaattgcagctgaggaatctttgaagtcattagttcactatacaaaa |
43130447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 262 - 298
Target Start/End: Original strand, 33931910 - 33931946
Alignment:
| Q |
262 |
cctccgtctcattataagtgtctcattttagttgtac |
298 |
Q |
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| T |
33931910 |
cctccgtttcattataagtgtctcatttgagttgtac |
33931946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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