View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14705_low_33 (Length: 232)
Name: NF14705_low_33
Description: NF14705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14705_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 55615853 - 55615980
Alignment:
| Q |
12 |
aagcaaaggtaaacagtaagtaaataattaccagcatcaaatcctctttcccgcaagcgtgacatcaccatgcgtttgaatccaggcgaagatttgtcac |
111 |
Q |
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| T |
55615853 |
aagcaaaggtaaacagtaagtaaataattaccagcatcaaatcctctttcccgcaagcgtgacatcaccatgcgtttgaatccaggcgaagatttgtcac |
55615952 |
T |
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| Q |
112 |
caccaacaacttcaattgcaagttcagc |
139 |
Q |
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| T |
55615953 |
caccaacaacttcaattgcaagttcagc |
55615980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 55623157 - 55623284
Alignment:
| Q |
12 |
aagcaaaggtaaacagtaagtaaataattaccagcatcaaatcctctttcccgcaagcgtgacatcaccatgcgtttgaatccaggcgaagatttgtcac |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55623157 |
aagcaaaggtaaacagtaagtaaataattaccagcatcaaatcctctttcccgcaagcgtgacatcaccatgcgtttgaatccaggcgaagatttgtcac |
55623256 |
T |
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| Q |
112 |
caccaacaacttcaattgcaagttcagc |
139 |
Q |
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| T |
55623257 |
caccaacaacttcaattgcaagttcagc |
55623284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 39 - 137
Target Start/End: Original strand, 55630564 - 55630662
Alignment:
| Q |
39 |
ttaccagcatcaaatcctctttcccgcaagcgtgacatcaccatgcgtttgaatccaggcgaagatttgtcaccaccaacaacttcaattgcaagttca |
137 |
Q |
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| T |
55630564 |
ttaccagcatcaaaaccactctcccgcaagcgtgacatgattatgcgtttgaatccagacgaagacttatcaccgccaacaacttgaatggcaagttca |
55630662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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