View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14705_low_36 (Length: 227)
Name: NF14705_low_36
Description: NF14705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14705_low_36 |
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| [»] chr5 (3 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 38382941 - 38382727
Alignment:
| Q |
13 |
gcgattattcaaagcaatattgttgttcttgtgactagtcctgattccacaacacttttaagaaacttattcttactttatatattaattgtattaattc |
112 |
Q |
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| T |
38382941 |
gcgattattcaaagcaatattgttgttcttgtgactagtcctgattccacaacacttttgagaaacttattcttactttatatattaattgtattaattc |
38382842 |
T |
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| Q |
113 |
cattggtatgtagaccaataatgttttggatcatcaaacgtacaccagaaggaagacctgtgaaggatagttacatttatgttatcatttcaatggtttt |
212 |
Q |
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| T |
38382841 |
cattggtatgtagaccaataatgttttggatcatcaaacgtacaccagaaggaagacctgtgaaggatagttacctttatgttatcatttcaatggtttt |
38382742 |
T |
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| Q |
213 |
tgtttttggcatttt |
227 |
Q |
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| T |
38382741 |
tgtttttggcatttt |
38382727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 38391785 - 38391585
Alignment:
| Q |
27 |
caatattgttgttcttgtgactagtcctgattccacaacacttttaagaaacttattcttactttatatattaattgtattaattccattggtatgtaga |
126 |
Q |
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|||| |||||| |||| ||||||||||||||| || |||||||| |||||| ||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
38391785 |
caattttgttgctcttatgactagtcctgatttgacgacacttttgagaaacatattcttactttatatattgtttgtattaataccattggtatgtaga |
38391686 |
T |
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| Q |
127 |
ccaataatgttttggatcatcaaacgtacaccagaaggaagacctgtgaaggatagttacatttatgttatcatttcaatggtttttgtttttggcattt |
226 |
Q |
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| T |
38391685 |
ccaataatgttttggatcatcaaacatacaccagaaggaagacctgtgaaggatagttacatttatgttatcatttcaatggtttttgttcttggtattt |
38391586 |
T |
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| Q |
227 |
t |
227 |
Q |
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| T |
38391585 |
t |
38391585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 68 - 227
Target Start/End: Complemental strand, 38400333 - 38400174
Alignment:
| Q |
68 |
ttttaagaaacttattcttactttatatattaattgtattaattccattggtatgtagaccaataatgttttggatcatcaaacgtacaccagaaggaag |
167 |
Q |
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||||||||||| | |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38400333 |
ttttaagaaacatgatcttactttatacattaattgcattaattccattggtatgtagaccaataatgttttggatcatcaaacgtacaccagaaggaag |
38400234 |
T |
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| Q |
168 |
acctgtgaaggatagttacatttatgttatcatttcaatggtttttgtttttggcatttt |
227 |
Q |
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| T |
38400233 |
acctgtgaaggatagttacatttatgttatcatttcaatggtttttgttcttggtatttt |
38400174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 37839707 - 37839907
Alignment:
| Q |
27 |
caatattgttgttcttgtgactagtcctgattccacaacacttttaagaaacttattcttactttatatattaattgtattaattccattggtatgtaga |
126 |
Q |
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||||||||||| |||| |||||||||| |||| || |||| |||||||| |||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
37839707 |
caatattgttgctcttaagactagtcctaattctacggcactcttaagaaatatattcttacttttcatattttttgtattaattccattggtatgtaga |
37839806 |
T |
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| Q |
127 |
ccaataatgttttggatcatcaaacgtacaccagaaggaagacctgtgaaggatagttacatttatgttatcatttcaatggtttttgtttttggcattt |
226 |
Q |
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| T |
37839807 |
ccaataatgttttggatcatcaaacatacaccagaaggaagacctgtgaaagatagttacatttatgttatcatttcaacggtttttcttcttggtattt |
37839906 |
T |
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| Q |
227 |
t |
227 |
Q |
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| T |
37839907 |
t |
37839907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 5622550 - 5622628
Alignment:
| Q |
131 |
taatgttttggatcatcaaacgtacaccagaaggaagacctgtgaaggatagttacatttatgttatcatttcaatggt |
209 |
Q |
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| T |
5622550 |
taatgttttggatcatcagacatactaaagaaggaagacctgtggatgatggttacatctatggtatcattttaatggt |
5622628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 35299169 - 35299099
Alignment:
| Q |
131 |
taatgttttggatcatcaaacgtacaccagaaggaagacctgtgaaggatagttacatttatgttatcatt |
201 |
Q |
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| T |
35299169 |
taatgttttggatcatcagacatactaaagaaggaagacctgtggatgatggttacatctatggtatcatt |
35299099 |
T |
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