View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14705_low_7 (Length: 459)
Name: NF14705_low_7
Description: NF14705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14705_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 129 - 443
Target Start/End: Original strand, 4097261 - 4097575
Alignment:
| Q |
129 |
ttgaagggaacttaattatatcactttgcaggaaaaatgcagaagccattaccagagttgttaaaggagtatgatctaccaataggaatctttcctcgtg |
228 |
Q |
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| T |
4097261 |
ttgaagggaacttaattatatcactttgcaggaaaaatgcagaagccattaccagagttgttaaaggagtatgatctaccaataggaatctttcctcgtg |
4097360 |
T |
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| Q |
229 |
atgcaacaaactacgaatttaacgaagagacggggaagcttcaagtcttcattcctcaggtctgcgaagtaggctataaggattcatccgtcttgcgttt |
328 |
Q |
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| T |
4097361 |
atgcaacaaactacgaatttaacgaagagacgggaaagcttgaagtcttcatccctcaggtctgcgaagtaggctataaggattcatccgtcttgcgttt |
4097460 |
T |
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| Q |
329 |
cttcaccaccgttactggttatctggagaaaggaaagctagcagacatcgagggaatgaagacaaaagtaattatctgggtaaaagtcacaaccattttc |
428 |
Q |
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| T |
4097461 |
cttcaccaccgttactggttatctggagaaaggaaagctagcagacatcgagggaatgaagacaaaagtaattatctgggtaaaagtgacaaccattttc |
4097560 |
T |
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| Q |
429 |
tccgagggatcaaag |
443 |
Q |
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| T |
4097561 |
tccgagggatcaaag |
4097575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 4096095 - 4096183
Alignment:
| Q |
18 |
tattgaaggcggaaccaaatggttggtcaacaaagtaaaaggtttgtatttcctatttccatatgttgctcaaacatttatcttttcaa |
106 |
Q |
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| T |
4096095 |
tattgaaggcggaaccaaatggttggtcaacaaagtaaaaggtttctatttcctatttccatatgttgctcaaacatctatcttttcaa |
4096183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 153 - 397
Target Start/End: Complemental strand, 25796905 - 25796661
Alignment:
| Q |
153 |
tttgcaggaaaaatgcagaagccattaccagagttgttaaaggagtatgatctaccaataggaatctttcctcgtgatgcaacaaactacgaatttaacg |
252 |
Q |
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||||||||||| ||||| || |||||| |||||||| | |||||||||||||||||||||||||||||||| ||||| |||||||||||||| || || | |
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| T |
25796905 |
tttgcaggaaagatgcaaaaaccattaacagagttgctgaaggagtatgatctaccaataggaatctttccccgtgacgcaacaaactacgagttcaatg |
25796806 |
T |
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| Q |
253 |
aagagacggggaagcttcaagtcttcattcctcaggtctgcgaagtaggctataaggattcatccgtcttgcgtttcttcaccaccgttactggttatct |
352 |
Q |
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| T |
25796805 |
aagaaacaagaaagcttgttgtttacattcctcaagtgtgtgaagtaggctatagagattcatcagtcttgcgcttcacaaccactgtttctggttactt |
25796706 |
T |
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| Q |
353 |
ggagaaaggaaagctagcagacatcgagggaatgaagacaaaagt |
397 |
Q |
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| T |
25796705 |
ggagaaaggaaagctagctgatatagagggtatgaagaccaaagt |
25796661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 25797218 - 25797168
Alignment:
| Q |
19 |
attgaaggcggaaccaaatggttggtcaacaaagtaaaaggtttgtatttc |
69 |
Q |
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|||||||| |||||||||||| | ||||||||| ||||||||||||||||| |
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| T |
25797218 |
attgaaggaggaaccaaatggctcgtcaacaaattaaaaggtttgtatttc |
25797168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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