View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14706_high_1 (Length: 584)
Name: NF14706_high_1
Description: NF14706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14706_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 16 - 497
Target Start/End: Original strand, 49410695 - 49411176
Alignment:
| Q |
16 |
tgcttgttctccacgcgccgcccagcggtcgtaagaactaggttcattgttgaggatttcgatgaagcttttgtttgagttaataagagtgtggtaagtg |
115 |
Q |
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| T |
49410695 |
tgcttgttctccacgcgccgcccagcggtcgtaagaactaggttcattgttgaggatttcgatgaagcttttgtttgagttaataagagtgtggtaagtg |
49410794 |
T |
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| Q |
116 |
aaattgaaggagtgaagaggaatgcaagaagaggatagaaggatgaaaatgtaatttgaacgatcgtcgatgagagcccgtgcgactaatcgacgagccg |
215 |
Q |
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| T |
49410795 |
aaattgaaggagtgaagaggaatgcaagaagaggatagaaggatgaaaatgtaatttgaacgatcgtcgatgagagcccgtgcgactaatcgacgcgccg |
49410894 |
T |
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| Q |
216 |
ctgaggtgagagtgggggagaatctagctgttggttttgaaggaatgatacggtttgagaaaacaccagaaaaaggagggtcgtaagagaatgttgggtc |
315 |
Q |
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| T |
49410895 |
ctgaggtgagagtgggggagaatctagctgttggttttgaaggaatgatacggtttgagaaaacaccagaaaaaggagggtcgtaagagaatgttgggtc |
49410994 |
T |
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| Q |
316 |
agcatgaatgtagatattgtacaannnnnnngggatttggttgaagtaagattcccataatgaagcaaatggaagaggagttgttgttaagaacatgaat |
415 |
Q |
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| T |
49410995 |
agcatgaatgtagatattgtacaatttttttgggatttggttgaagtaagattcccataatgaagcaaatggaagaggagttgttgttaagaacatgaat |
49411094 |
T |
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| Q |
416 |
gctaattttcttggccatgttgcttttcgctttgtatggttggctacaatgaacaacgtttcctcttctttgtattcgtcta |
497 |
Q |
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| T |
49411095 |
gctaattttcttggccatgttgcttttcgctttgtatggttggctacaatgaacaacgtttcctcttctttgtattcgtcta |
49411176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 532 - 574
Target Start/End: Original strand, 49411211 - 49411253
Alignment:
| Q |
532 |
agtatttatacttaagaaagtggttgtgaggtttgggtttgat |
574 |
Q |
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| T |
49411211 |
agtatttatacttaagaaagtggttgtgaggtttgggtttgat |
49411253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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