View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14706_high_10 (Length: 351)
Name: NF14706_high_10
Description: NF14706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14706_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 11360469 - 11360124
Alignment:
| Q |
1 |
ctctttgaaagatttgattcatttaagaagatcttatgcatgcaatgcatgatcatattgtcttgatatttgttagtgtttaaaatgcagaaaaatggag |
100 |
Q |
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| T |
11360469 |
ctctttgaaagatttgattcatttaagaagatcttatgcatgcaatgcatgatcatattgttttgatatttgttagtgtttaaaatgcagaaaaatggag |
11360370 |
T |
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| Q |
101 |
gatttaatcagcaatctacctgattcacttataactcacattatatcttttcttcctacaaaagatgcagttcgtacaagtgtcttatctaagaaatgga |
200 |
Q |
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| T |
11360369 |
gatttaatcagtaatctacctgattcacttataactcacattatatcttgtcttcctacaaaagatgcagttcgtacaagtgtcttatctaagaaatggt |
11360270 |
T |
|
| Q |
201 |
taaaccattggatctccatcaccaagctagatttagatgatggtgtgttctattctcaaaggaggaataaatcaggtgcaaaacaaaactttataaactt |
300 |
Q |
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| T |
11360269 |
taaaccattggatctccatcaccaagctagatttagatgatggtgtgttctattctcaaaggaggaataaatcaggtgcaaaacaaaactttataaactt |
11360170 |
T |
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| Q |
301 |
tgtgaataggactcttctttttacaccaagaaacaatgtggaaagt |
346 |
Q |
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| T |
11360169 |
tgtgaataggactcttctttttacaccaagaaacaatgtggaaagt |
11360124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 98 - 192
Target Start/End: Original strand, 30723221 - 30723315
Alignment:
| Q |
98 |
gaggatttaatcagcaatctacctgattcacttataactcacattatatcttttcttcctacaaaagatgcagttcgtacaagtgtcttatctaa |
192 |
Q |
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| T |
30723221 |
gaggatataatcagcaatctacctgattcacttataacttacattctgtcttgtgtccctacgaaagacgctgctcgtacaagtgtgttatctaa |
30723315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 218 - 309
Target Start/End: Original strand, 30715646 - 30715740
Alignment:
| Q |
218 |
atcaccaagctagatttagatgatggtgtgttctattctc---aaaggaggaataaatcaggtgcaaaacaaaactttataaactttgtgaatag |
309 |
Q |
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| T |
30715646 |
atcaccaagttggacttagatgatagtgtgttccattctcccaaaagtaagaaaaaatcaggtggaaaacaacactttataaactttgtcaatag |
30715740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 192
Target Start/End: Original strand, 1079016 - 1079088
Alignment:
| Q |
120 |
ctgattcacttataactcacattatatcttttcttcctacaaaagatgcagttcgtacaagtgtcttatctaa |
192 |
Q |
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| T |
1079016 |
ctgaatcacttataactcacatcatctcttttctcccaaccaaagatgccgttcgcacttgtgtcttatctaa |
1079088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 192
Target Start/End: Complemental strand, 5132790 - 5132718
Alignment:
| Q |
120 |
ctgattcacttataactcacattatatcttttcttcctacaaaagatgcagttcgtacaagtgtcttatctaa |
192 |
Q |
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|||| ||||||||||||||||| || |||||||| || || |||||||| ||||| || ||||||||||||| |
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| T |
5132790 |
ctgaatcacttataactcacatcatctcttttctcccaaccaaagatgccgttcgcacttgtgtcttatctaa |
5132718 |
T |
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