View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14706_high_2 (Length: 489)
Name: NF14706_high_2
Description: NF14706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14706_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Complemental strand, 22010244 - 22009770
Alignment:
| Q |
1 |
tttacaccttcctctaaccagatttcacactaatgtcactttgttatattattttcaaaaatatctcaacaaacatctatatgggtagacttnnnnnnnt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
22010244 |
tttacaccttcctctaaccagatttcacactaatgtcactttgttatattattttcaaaaatatctcaacaaacatctatatgggtagacttaataaaat |
22010145 |
T |
|
| Q |
101 |
ttacacaggcaatatgtagttttatattctagaatattacctgcaatcattatctaattaaatcaatgcatgtttatataaggagtattaaatggactag |
200 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
22010144 |
ttacactgtcaatatgtagttttatattctagaatattacctgcaatcattatctaattaaatcaatgcatgtttatataagaagtattaaatggactag |
22010045 |
T |
|
| Q |
201 |
ctgagaggagtcaatgtgaaccttatcatagacaagatctacattgactacagtcaataaatggctaagataagatggctcagataagtcaggtccaaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22010044 |
ctgagaggagtcaatgtgaaccttatcatagacaagatctacattgactacagtcaataaatggctaagataagatggctcagataagtcaggtccaaaa |
22009945 |
T |
|
| Q |
301 |
tataaagttggaccatgaatcgcctgatcttaattgaacggtatagatcgagtattatactaaatatctaaatataaatatagatagatgtgaacttaca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22009944 |
tataaagttggaccatgaatcgcctgatcttaattgaacggtatagatcgagtattatactaaatatctaaatataaatatagatagatgtgaacttaca |
22009845 |
T |
|
| Q |
401 |
cttgcaagtggcttcacatttgttgcagtcaatgaaacaacctttatccttcttgttcttctttggcttcctttg |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
22009844 |
cttgcaagtggcttcacatttgttgcagtcaatgaaacaacctttatcctttttgttcttctttggcttcctttg |
22009770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 388 - 472
Target Start/End: Complemental strand, 21992480 - 21992393
Alignment:
| Q |
388 |
atgtgaacttacacttgcaagtggcttcacatttgttgc---agtcaatgaaacaacctttatccttcttgttcttctttggcttcct |
472 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21992480 |
atgtgaacttacacttgcaagtggcttcacatttgctgctgcagtcaatgaaacaacctttatccttcttgttcttctttggcttcct |
21992393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University