View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14706_high_20 (Length: 296)
Name: NF14706_high_20
Description: NF14706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14706_high_20 |
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| [»] scaffold0363 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 9 - 290
Target Start/End: Original strand, 5607064 - 5607345
Alignment:
| Q |
9 |
aaaatctcaatgttagtatttttgtagtaagtttaaatttactgtataaaaaacatatgtctatgaagggaactagtgatatcattctcttactctatta |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5607064 |
aaaatctcaatgttagtatttttgtagtaagtttaaatttactgtataaaaaacatatgtctatgaagggaactagtgatatcattctcttactctatta |
5607163 |
T |
|
| Q |
109 |
tttttcaatacatcataaacttcctcaggatcacataatctactgcgttgtctgggattcataagtgattcttcacgaacaatttgttttcccatttcct |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5607164 |
tttttcaatacatcataaacttcctcaggatcacataatctactgcgttgtccgggattcttaagtgattcttcacgaacaatttgttttcccatttcct |
5607263 |
T |
|
| Q |
209 |
gtatcaagccatgcatttgtatgcaattttcagagtcaacccttacaagagccttgtctaaaagatgacttatccctatatc |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5607264 |
gtatcaagccatgcatttgtatgcaattttcagagtcaacccttacaagagccttgtctaaaagatgacttatccctatatc |
5607345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 9 - 290
Target Start/End: Complemental strand, 5628306 - 5628025
Alignment:
| Q |
9 |
aaaatctcaatgttagtatttttgtagtaagtttaaatttactgtataaaaaacatatgtctatgaagggaactagtgatatcattctcttactctatta |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5628306 |
aaaatctcaatgttagtatttttgtagtaagtttaaatttactgtataaaaaacatatgtctatgaagggaactagtgatatcattctcttactctatta |
5628207 |
T |
|
| Q |
109 |
tttttcaatacatcataaacttcctcaggatcacataatctactgcgttgtctgggattcataagtgattcttcacgaacaatttgttttcccatttcct |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5628206 |
tttttcaatacatcataaacttcctcaggatcacataatctactgcgttgtccgggattcttaagtgattcttcacgaacaatttgttttcccatttcct |
5628107 |
T |
|
| Q |
209 |
gtatcaagccatgcatttgtatgcaattttcagagtcaacccttacaagagccttgtctaaaagatgacttatccctatatc |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5628106 |
gtatcaagccatgcatttgtatgcaattttcagagtcaacccttacaagagccttgtctaaaagatgacttatccctatatc |
5628025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 11 - 290
Target Start/End: Complemental strand, 5550863 - 5550584
Alignment:
| Q |
11 |
aatctcaatgttagtatttttgtagtaagtttaaatttactgtataaaaaa-catatgtctatgaagggaactagtgatatcattctcttactctattat |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||| |||||||||||| |||||| ||| |||||| || ||||||||| |||||||||||||| |
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| T |
5550863 |
aatctcaatgttagtatttttgtagtaagtttca-tttcctgtataaaaaaacatatgactagaaagggagctgacgatatcattttcttactctattat |
5550765 |
T |
|
| Q |
110 |
ttttcaatacatcataaacttcctcaggatcacataatctactgcgttgtctgggattcataagtgattcttcacgaacaatttgttttcccatttcctg |
209 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5550764 |
ttttcaatacgtcataaacttcctcaggatcacataatctactgcgttgtccgggattcttaagtgattcttcacgaacaatttgttttcccatttcctg |
5550665 |
T |
|
| Q |
210 |
tatcaagccatgcatttgtatgcaattttcagagtcaacccttacaagagccttgtctaaaagatgacttatccctatatc |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
5550664 |
tatcaagccatgcatttgtatgcaattttcagagtctaccgttacaagagccttgtctaaaagacgacttatccctatatc |
5550584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 9 - 290
Target Start/End: Complemental strand, 14405795 - 14405512
Alignment:
| Q |
9 |
aaaatctcaatgttagtatttttgtagt--aagtttaaatttactgtataaaaaacatatgtctatgaagggaactagtgatatcattctcttactctat |
106 |
Q |
| |
|
||||||||||||||||||| |||||||| || || |||| || |||||||||||||||| || |||||||| | | | ||||||||||||||||| |
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| T |
14405795 |
aaaatctcaatgttagtatatttgtagttaaaagttgcattttctatataaaaaacatatgtgtaggaagggaagtgagggtttcattctcttactctat |
14405696 |
T |
|
| Q |
107 |
tatttttcaatacatcataaacttcctcaggatcacataatctactgcgttgtctgggattcataagtgattcttcacgaacaatttgttttcccatttc |
206 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
14405695 |
tatttttcaatacatcgtaaacttccttaggatcacataatctactgcgttgtccgggattcttatgtgattcttcacgaacaatttgttttcccatttc |
14405596 |
T |
|
| Q |
207 |
ctgtatcaagccatgcatttgtatgcaattttcagagtcaacccttacaagagccttgtctaaaagatgacttatccctatatc |
290 |
Q |
| |
|
||||||||| | ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
14405595 |
ttgtatcaagtcgtgcatttgtatgcaatttttagagtcaaccctcacaagagccttgtctaaaagatgacttatcccaatatc |
14405512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 19 - 290
Target Start/End: Complemental strand, 13165945 - 13165676
Alignment:
| Q |
19 |
tgttagtatttttgtagtaagtttaaatttactgtataaaaaacatatgtctatgaagggaactagtgatatcattctcttactctattatttttcaata |
118 |
Q |
| |
|
|||||||| ||||||||||| || |||||| ||||||||||||||||| ||| |||| || | ||||||||||||||||||||||||||||||| |
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| T |
13165945 |
tgttagtacttttgtagtaacttgcaattta-tgtataaaaaacatatgcctaggaagcaggtgagcg-tatcattctcttactctattatttttcaata |
13165848 |
T |
|
| Q |
119 |
catcataaacttcctcaggatcacataatctactgcgttgtctgggattcataagtgattcttcacgaacaatttgttttcccatttcctgtatcaagcc |
218 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||| |||||||||||||||||||| | |
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|
| T |
13165847 |
catcaaaaacttccttaggatcacataatctactgcgttgtccaggattcttaagagattcttcacgaacaatttgtcttcccatttcctgtatcaagtc |
13165748 |
T |
|
| Q |
219 |
atgcatttgtatgcaattttcagagtcaacccttacaagagccttgtctaaaagatgacttatccctatatc |
290 |
Q |
| |
|
||||||||||||| |||||| | ||||||| |||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
13165747 |
atgcatttgtatgaaatttttatagtcaactcttataagagccttgtctaaaagatgacttatccctatatc |
13165676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 94 - 290
Target Start/End: Original strand, 6309580 - 6309776
Alignment:
| Q |
94 |
tctcttactctattatttttcaatacatcataaacttcctcaggatcacataatctactgcgttgtctgggattcataagtgattcttcacgaacaattt |
193 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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|
| T |
6309580 |
tctcttactctattatttttcaatacattacaaacttccttaggatcacataatctactgcgttgtccgggattcttaagtgattcttcacgaacaattt |
6309679 |
T |
|
| Q |
194 |
gttttcccatttcctgtatcaagccatgcatttgtatgcaattttcagagtcaacccttacaagagccttgtctaaaagatgacttatccctatatc |
290 |
Q |
| |
|
||||||| |||| ||||||||| ||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||| ||||||||||||||| |
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|
| T |
6309680 |
gttttcctgtttcttgtatcaagtcatgcatttgtatgcaattttcaaagtcaacgcttataagagccttgtctaaaagattacttatccctatatc |
6309776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 96 - 292
Target Start/End: Complemental strand, 32634256 - 32634060
Alignment:
| Q |
96 |
tcttactctattatttttcaatacatcataaacttcctcaggatcacataatctactgcgttgtctgggattcataagtgattcttcacgaacaatttgt |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| || |||||||||| |||| |||||| |||| |||||||||||||| | |||| |
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|
| T |
32634256 |
tcttactctattatttttcaatacatcataaacttccttaggatcccacaatctactgctttgttctggattcttaagagattcttcacgaacgacttgt |
32634157 |
T |
|
| Q |
196 |
tttcccatttcctgtatcaagccatgcatttgtatgcaattttcagagtcaacccttacaagagccttgtctaaaagatgacttatccctatatctg |
292 |
Q |
| |
|
|| |||||||| ||||||||| ||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||| |||||||||||||||| |
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|
| T |
32634156 |
ttgcccatttcttgtatcaagtcatgcatttgtatgcaattttcaaagtcaactcttataagagccttgtctaaaagagttcttatccctatatctg |
32634060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 231
Target Start/End: Original strand, 12187811 - 12187867
Alignment:
| Q |
175 |
gattcttcacgaacaatttgttttcccatttcctgtatcaagccatgcatttgtatg |
231 |
Q |
| |
|
|||||||||||||||||||| | |||||||| |||| |||| ||||||| |||||| |
|
|
| T |
12187811 |
gattcttcacgaacaatttgcctacccatttcttgtaacaagtcatgcatctgtatg |
12187867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 231
Target Start/End: Original strand, 12432239 - 12432295
Alignment:
| Q |
175 |
gattcttcacgaacaatttgttttcccatttcctgtatcaagccatgcatttgtatg |
231 |
Q |
| |
|
|||||||||||||||||||| | |||||||| |||| |||| ||||||| |||||| |
|
|
| T |
12432239 |
gattcttcacgaacaatttgcctacccatttcttgtaacaagtcatgcatctgtatg |
12432295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 9 - 290
Target Start/End: Original strand, 13058 - 13341
Alignment:
| Q |
9 |
aaaatctcaatgttagtatttttgtagt--aagtttaaatttactgtataaaaaacatatgtctatgaagggaactagtgatatcattctcttactctat |
106 |
Q |
| |
|
||||||||||||||||||| |||||||| || || |||| || |||||||||||||||| || |||||||| | | | ||||||||||||||||| |
|
|
| T |
13058 |
aaaatctcaatgttagtatatttgtagttaaaagttgcattttctatataaaaaacatatgtgtaggaagggaagtgagggtttcattctcttactctat |
13157 |
T |
|
| Q |
107 |
tatttttcaatacatcataaacttcctcaggatcacataatctactgcgttgtctgggattcataagtgattcttcacgaacaatttgttttcccatttc |
206 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
13158 |
tatttttcaatacatcgtaaacttccttaggatcacataatctactgcgttgtccgggattcttatgtgattcttcacgaacaatttgttttcccatttc |
13257 |
T |
|
| Q |
207 |
ctgtatcaagccatgcatttgtatgcaattttcagagtcaacccttacaagagccttgtctaaaagatgacttatccctatatc |
290 |
Q |
| |
|
||||||||| | ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13258 |
ttgtatcaagtcgtgcatttgtatgcaatttttagagtcaaccctcacaagagccttgtctaaaagatgacttatcccaatatc |
13341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 3809246 - 3809295
Alignment:
| Q |
108 |
atttttcaatacatcataaacttcctcaggatcacataatctactgcgtt |
157 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| ||||||| |||||||| |
|
|
| T |
3809246 |
atttttcaatacatcataaatttcatcaggattccataatcgactgcgtt |
3809295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 3816832 - 3816881
Alignment:
| Q |
108 |
atttttcaatacatcataaacttcctcaggatcacataatctactgcgtt |
157 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| ||||||| |||||||| |
|
|
| T |
3816832 |
atttttcaatacatcataaatttcatcaggattccataatcgactgcgtt |
3816881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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