View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14706_high_26 (Length: 251)

Name: NF14706_high_26
Description: NF14706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14706_high_26
NF14706_high_26
[»] chr1 (38 HSPs)
chr1 (1-232)||(46160141-46160372)
chr1 (33-232)||(46167003-46167205)
chr1 (1-36)||(26834827-26834862)
chr1 (1-36)||(42709675-42709710)
chr1 (4-42)||(52688128-52688166)
chr1 (1-38)||(6920977-6921014)
chr1 (1-38)||(24589495-24589532)
chr1 (1-38)||(38238863-38238900)
chr1 (1-38)||(49251812-49251849)
chr1 (1-38)||(50942616-50942653)
chr1 (1-37)||(3552807-3552843)
chr1 (1-37)||(16436053-16436089)
chr1 (3-35)||(22172678-22172710)
chr1 (1-36)||(16010915-16010950)
chr1 (1-36)||(18127333-18127368)
chr1 (1-36)||(24583828-24583863)
chr1 (1-36)||(41529108-41529143)
chr1 (1-39)||(2994131-2994169)
chr1 (1-35)||(4226239-4226273)
chr1 (1-35)||(4750447-4750481)
chr1 (1-35)||(8712125-8712159)
chr1 (1-35)||(29672303-29672337)
chr1 (4-38)||(32145350-32145384)
chr1 (1-35)||(32557932-32557966)
chr1 (1-35)||(38680135-38680169)
chr1 (1-35)||(39282532-39282566)
chr1 (3-36)||(23624838-23624871)
chr1 (2-35)||(39674017-39674050)
chr1 (34-75)||(43112831-43112872)
chr1 (2-38)||(3163172-3163208)
chr1 (2-38)||(12959545-12959581)
chr1 (2-42)||(17180664-17180704)
chr1 (3-35)||(23827365-23827397)
chr1 (1-37)||(29361491-29361527)
chr1 (2-38)||(34022421-34022457)
chr1 (1-37)||(34967578-34967614)
chr1 (1-33)||(42643110-42643142)
chr1 (1-37)||(51984007-51984043)
[»] chr8 (41 HSPs)
chr8 (80-198)||(13023583-13023701)
chr8 (1-39)||(29938286-29938324)
chr8 (1-42)||(6796091-6796132)
chr8 (1-37)||(16872608-16872644)
chr8 (1-37)||(19715225-19715261)
chr8 (1-36)||(8378337-8378372)
chr8 (1-36)||(22578204-22578239)
chr8 (1-36)||(23597260-23597295)
chr8 (1-36)||(23606182-23606217)
chr8 (1-36)||(31873667-31873702)
chr8 (3-38)||(37504987-37505022)
chr8 (1-36)||(38896706-38896741)
chr8 (1-36)||(42373254-42373289)
chr8 (1-35)||(5830942-5830976)
chr8 (1-35)||(6878512-6878546)
chr8 (1-35)||(12000480-12000514)
chr8 (80-198)||(13070221-13070339)
chr8 (1-35)||(14433396-14433430)
chr8 (1-35)||(20091223-20091257)
chr8 (1-35)||(28074509-28074543)
chr8 (1-35)||(35544240-35544274)
chr8 (1-35)||(35631027-35631061)
chr8 (1-35)||(39284196-39284230)
chr8 (2-36)||(40488139-40488173)
chr8 (1-35)||(42946667-42946701)
chr8 (4-37)||(16421858-16421891)
chr8 (2-35)||(29867257-29867290)
chr8 (1-38)||(29949094-29949131)
chr8 (3-36)||(39645958-39645991)
chr8 (1-38)||(42827733-42827770)
chr8 (1-29)||(4631186-4631214)
chr8 (2-38)||(9724580-9724616)
chr8 (3-35)||(18203268-18203300)
chr8 (1-37)||(25838720-25838756)
chr8 (4-36)||(27919676-27919708)
chr8 (2-38)||(33012060-33012096)
chr8 (3-35)||(34908679-34908711)
chr8 (1-37)||(37163781-37163817)
chr8 (1-37)||(38367651-38367687)
chr8 (2-38)||(39628838-39628874)
chr8 (2-38)||(39638388-39638424)
[»] chr7 (26 HSPs)
chr7 (1-45)||(45780897-45780941)
chr7 (1-37)||(9818082-9818118)
chr7 (1-37)||(10720007-10720043)
chr7 (1-37)||(24924419-24924455)
chr7 (1-37)||(45823206-45823242)
chr7 (1-36)||(1643753-1643788)
chr7 (1-36)||(10453155-10453190)
chr7 (1-36)||(22918172-22918207)
chr7 (1-36)||(23059069-23059104)
chr7 (1-40)||(38510157-38510196)
chr7 (1-36)||(46373250-46373285)
chr7 (1-36)||(47834399-47834434)
chr7 (1-35)||(4513607-4513641)
chr7 (1-35)||(13439317-13439351)
chr7 (1-35)||(24685675-24685709)
chr7 (1-35)||(34275703-34275737)
chr7 (1-35)||(35421862-35421896)
chr7 (1-35)||(44480986-44481020)
chr7 (1-35)||(44894821-44894855)
chr7 (1-35)||(47578926-47578960)
chr7 (1-38)||(11910679-11910716)
chr7 (2-35)||(25756341-25756374)
chr7 (5-42)||(28472319-28472356)
chr7 (1-38)||(42149840-42149877)
chr7 (11-39)||(34715415-34715443)
chr7 (3-35)||(42121901-42121933)
[»] chr4 (34 HSPs)
chr4 (1-36)||(52920831-52920866)
chr4 (1-37)||(10555343-10555379)
chr4 (1-37)||(42507783-42507819)
chr4 (1-37)||(43587663-43587699)
chr4 (1-36)||(2401219-2401254)
chr4 (1-36)||(4294176-4294211)
chr4 (1-36)||(23621637-23621672)
chr4 (1-36)||(23949785-23949820)
chr4 (1-36)||(29832790-29832825)
chr4 (1-36)||(30088845-30088880)
chr4 (1-36)||(31648581-31648616)
chr4 (1-36)||(34016766-34016801)
chr4 (1-36)||(48380572-48380607)
chr4 (1-36)||(49236006-49236041)
chr4 (1-36)||(51817191-51817226)
chr4 (1-36)||(55968540-55968575)
chr4 (1-36)||(55984361-55984396)
chr4 (1-35)||(3506010-3506044)
chr4 (1-35)||(7258156-7258190)
chr4 (1-35)||(13880451-13880485)
chr4 (1-35)||(22019090-22019124)
chr4 (1-35)||(25771225-25771259)
chr4 (1-35)||(32860866-32860900)
chr4 (1-35)||(34447632-34447666)
chr4 (1-35)||(35877090-35877124)
chr4 (1-35)||(42179696-42179730)
chr4 (4-46)||(54270758-54270800)
chr4 (1-35)||(56038663-56038697)
chr4 (1-38)||(17609228-17609265)
chr4 (35-72)||(35734071-35734108)
chr4 (3-36)||(41858712-41858745)
chr4 (1-37)||(1788841-1788877)
chr4 (1-37)||(27383681-27383717)
chr4 (1-41)||(34002165-34002205)
[»] chr2 (25 HSPs)
chr2 (1-36)||(44710082-44710117)
chr2 (1-38)||(325379-325416)
chr2 (1-38)||(3628632-3628669)
chr2 (1-38)||(36443510-36443547)
chr2 (1-36)||(19002904-19002939)
chr2 (1-36)||(22060978-22061013)
chr2 (1-36)||(31909825-31909860)
chr2 (1-36)||(39407775-39407810)
chr2 (1-36)||(39927738-39927773)
chr2 (1-36)||(40833467-40833502)
chr2 (1-35)||(13375311-13375345)
chr2 (1-35)||(14527749-14527783)
chr2 (1-35)||(14943511-14943545)
chr2 (1-35)||(26850070-26850104)
chr2 (1-35)||(27341837-27341871)
chr2 (1-35)||(28786971-28787005)
chr2 (1-35)||(40171785-40171819)
chr2 (1-35)||(42056036-42056070)
chr2 (1-38)||(19240863-19240900)
chr2 (4-37)||(27244919-27244952)
chr2 (1-37)||(6312214-6312250)
chr2 (1-29)||(19166429-19166457)
chr2 (2-38)||(23494438-23494474)
chr2 (3-35)||(30780056-30780088)
chr2 (5-37)||(41095923-41095955)
[»] chr3 (32 HSPs)
chr3 (1-43)||(19961073-19961115)
chr3 (1-35)||(45674321-45674355)
chr3 (1-38)||(25904156-25904193)
chr3 (1-38)||(29651990-29652027)
chr3 (1-38)||(52060519-52060556)
chr3 (1-37)||(8108433-8108469)
chr3 (4-40)||(34817155-34817191)
chr3 (1-37)||(43599568-43599604)
chr3 (1-36)||(3671628-3671663)
chr3 (1-40)||(23782060-23782099)
chr3 (1-36)||(38783689-38783724)
chr3 (1-36)||(43175733-43175768)
chr3 (1-36)||(45824133-45824168)
chr3 (1-35)||(24089328-24089362)
chr3 (1-35)||(24978829-24978863)
chr3 (1-35)||(27848898-27848932)
chr3 (1-35)||(28226971-28227005)
chr3 (1-35)||(33840048-33840082)
chr3 (1-35)||(34663430-34663464)
chr3 (1-35)||(41751101-41751135)
chr3 (1-35)||(44048098-44048132)
chr3 (1-35)||(48333710-48333744)
chr3 (1-35)||(50622749-50622783)
chr3 (1-35)||(51865689-51865723)
chr3 (1-38)||(8104227-8104264)
chr3 (3-36)||(21216916-21216949)
chr3 (1-38)||(38483580-38483617)
chr3 (1-34)||(54080358-54080391)
chr3 (1-37)||(3645953-3645989)
chr3 (4-36)||(7674157-7674189)
chr3 (9-37)||(48962824-48962852)
chr3 (3-35)||(54103963-54103995)
[»] chr5 (16 HSPs)
chr5 (1-38)||(12360784-12360821)
chr5 (1-38)||(34163119-34163156)
chr5 (4-44)||(9248919-9248959)
chr5 (1-37)||(29619465-29619501)
chr5 (1-36)||(3633920-3633955)
chr5 (1-36)||(34382069-34382104)
chr5 (1-36)||(35869928-35869963)
chr5 (1-36)||(42940763-42940798)
chr5 (1-35)||(4456393-4456427)
chr5 (1-35)||(5378213-5378247)
chr5 (1-35)||(7363345-7363379)
chr5 (1-35)||(29816204-29816238)
chr5 (1-38)||(34607043-34607080)
chr5 (4-36)||(4060825-4060857)
chr5 (2-38)||(25538036-25538072)
chr5 (1-41)||(36347454-36347494)
[»] chr6 (14 HSPs)
chr6 (1-37)||(10364719-10364755)
chr6 (1-36)||(2603643-2603678)
chr6 (1-36)||(4657822-4657857)
chr6 (1-36)||(6835711-6835746)
chr6 (1-36)||(8201459-8201494)
chr6 (1-36)||(15497840-15497875)
chr6 (1-35)||(1352471-1352505)
chr6 (1-35)||(9461573-9461607)
chr6 (1-35)||(9961315-9961349)
chr6 (1-35)||(11172885-11172919)
chr6 (3-36)||(3787091-3787124)
chr6 (1-38)||(17941605-17941642)
chr6 (3-35)||(32393714-32393746)
chr6 (11-43)||(35039824-35039856)
[»] scaffold0475 (1 HSPs)
scaffold0475 (1-36)||(5118-5153)
[»] scaffold0264 (1 HSPs)
scaffold0264 (2-36)||(18928-18962)
[»] scaffold0160 (1 HSPs)
scaffold0160 (1-35)||(26008-26042)
[»] scaffold0037 (1 HSPs)
scaffold0037 (1-35)||(98862-98896)
[»] scaffold0154 (1 HSPs)
scaffold0154 (2-38)||(4229-4265)


Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 46160372 - 46160141
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtatatgataagcaattatgctacaagcgcctaattaagttgttcatacctgaaaggctgtgaactta 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46160372 tctaaagtgacatacaatttgagatggagggagtatatgataagcgattatgctacaagcgcctaattaagttgttcatacctgaaaggctgtgaactta 46160273  T
Q  101 aaagggctttctctctgaaaatttccattttcatcaagccatctctctggtctgaattgctcagcatcttcaccccacaagaactccatccttcccatga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46160272 aaagggctttctctctgaaaatttccattttcatcaagccatctctctggtctgaattgctcagcatcttcaccccacaagaactccatccttcccatga 46160173  T
Q  201 catatggatggaatgaaatatgatcacctttc 232  Q
    ||||||||||||||||||||| ||||||||||    
T  46160172 catatggatggaatgaaatataatcacctttc 46160141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 33 - 232
Target Start/End: Complemental strand, 46167205 - 46167003
Alignment:
Q  33 gtatatgataagcaattatgctac---aagcgcctaattaagttgttcatacctgaaaggctgtgaacttaaaagggctttctctctgaaaatttccatt 129  Q
    ||||||||||||| ||||||| ||   |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||    
T  46167205 gtatatgataagcgattatgcgacgacaagcgcctaattaagttgttcatacctggaaggctgtgaacttaaaagggctctctctttgaaaatttccatt 46167106  T
Q  130 ttcatcaagccatctctctggtctgaattgctcagcatcttcaccccacaagaactccatccttcccatgacatatggatggaatgaaatatgatcacct 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| | ||||||||    
T  46167105 ttcatcaagccatctctctggtctgaattgctcagcatcttcaccccacaagaacttcatccttcccatgacatatggttggaatgaaacaagatcacct 46167006  T
Q  230 ttc 232  Q
    |||    
T  46167005 ttc 46167003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 26834862 - 26834827
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  26834862 tctaaagtgacatacaatttgggatggagggagtat 26834827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 42709710 - 42709675
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  42709710 tctaaagtgacatacaatttgggatggagggagtat 42709675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 52688166 - 52688128
Alignment:
Q  4 aaagtgacatacaatttgggatggagggagtatatgata 42  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  52688166 aaagcgacatacaatttgggatggagggagtatatgata 52688128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 6920977 - 6921014
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtatat 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  6920977 tctaaagtgacatacaatttgggacggagggagtatat 6921014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 24589532 - 24589495
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtatat 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  24589532 tctaaagtgacatacaatttgggacggagggagtatat 24589495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 38238900 - 38238863
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtatat 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  38238900 tctaaagtgacatacaatttgggacggagggagtatat 38238863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 49251812 - 49251849
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtatat 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  49251812 tctaaagtgacatacaatttgggacggagggagtatat 49251849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 50942653 - 50942616
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtatat 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  50942653 tctaaagtgacatacaatttgggacggagggagtatat 50942616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 3552807 - 3552843
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtata 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  3552807 tctaaagtgacatacaatttgggacggagggagtata 3552843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 16436089 - 16436053
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtata 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  16436089 tctaaagtgacatacaatttgggacggagggagtata 16436053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 22172678 - 22172710
Alignment:
Q  3 taaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||||||||||||    
T  22172678 taaagtgacatacaatttgggatggagggagta 22172710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 16010950 - 16010915
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  16010950 tctaaagtgacatacaatttgggacggagggagtat 16010915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 18127368 - 18127333
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  18127368 tctaaagtgacatacaatttgggacggagggagtat 18127333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 24583863 - 24583828
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  24583863 tctaaagtgacatacaatttgggacggagggagtat 24583828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 41529143 - 41529108
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  41529143 tctaaagtgacatacaatttgggacggagggagtat 41529108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 2994169 - 2994131
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtatatg 39  Q
    |||||||||||||||||||||||| ||||| ||||||||    
T  2994169 tctaaagtgacatacaatttgggacggaggaagtatatg 2994131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 4226273 - 4226239
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  4226273 tctaaagtgacatacaatttgggacggagggagta 4226239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 4750447 - 4750481
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  4750447 tctaaagtgacatacaatttgggacggagggagta 4750481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 8712125 - 8712159
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  8712125 tctaaagtgacatacaatttgggacggagggagta 8712159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 29672337 - 29672303
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  29672337 tctaaagtgacatacaatttgggacggagggagta 29672303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 32145384 - 32145350
Alignment:
Q  4 aaagtgacatacaatttgggatggagggagtatat 38  Q
    ||||||||||||||||||||| |||||||||||||    
T  32145384 aaagtgacatacaatttgggacggagggagtatat 32145350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 32557966 - 32557932
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  32557966 tctaaagtgacatacaatttgggacggagggagta 32557932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 38680135 - 38680169
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||| ||||||||||||||||||||||||||||    
T  38680135 tctaaaatgacatacaatttgggatggagggagta 38680169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 39282566 - 39282532
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  39282566 tctaaagtgacatacaatttgggacggagggagta 39282532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 23624871 - 23624838
Alignment:
Q  3 taaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||| |||||||||||    
T  23624871 taaagtgacatacaatttgggacggagggagtat 23624838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 39674050 - 39674017
Alignment:
Q  2 ctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||| |||||||||||||||||||||||||||    
T  39674050 ctaaagcgacatacaatttgggatggagggagta 39674017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 43112872 - 43112831
Alignment:
Q  34 tatatgataagcaattatgctacaagcgcctaattaagttgt 75  Q
    ||||||||||||| |||||||||||||  |||||||||||||    
T  43112872 tatatgataagcatttatgctacaagcaactaattaagttgt 43112831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 3163208 - 3163172
Alignment:
Q  2 ctaaagtgacatacaatttgggatggagggagtatat 38  Q
    |||||| |||||||||||||||| |||||||||||||    
T  3163208 ctaaagcgacatacaatttgggacggagggagtatat 3163172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 12959545 - 12959581
Alignment:
Q  2 ctaaagtgacatacaatttgggatggagggagtatat 38  Q
    |||||| |||||||||||||||| |||||||||||||    
T  12959545 ctaaagcgacatacaatttgggacggagggagtatat 12959581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 17180704 - 17180664
Alignment:
Q  2 ctaaagtgacatacaatttgggatggagggagtatatgata 42  Q
    |||||| |||||||||||||||| |||||||||||| ||||    
T  17180704 ctaaagcgacatacaatttgggacggagggagtataggata 17180664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 23827397 - 23827365
Alignment:
Q  3 taaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||| ||||||||||    
T  23827397 taaagtgacatacaatttgggacggagggagta 23827365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 29361491 - 29361527
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtata 37  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  29361491 tctaaaatgacatacaatttgggacggagggagtata 29361527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 34022421 - 34022457
Alignment:
Q  2 ctaaagtgacatacaatttgggatggagggagtatat 38  Q
    |||||| |||||||||||||||| |||||||||||||    
T  34022421 ctaaagcgacatacaatttgggacggagggagtatat 34022457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34967578 - 34967614
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtata 37  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  34967578 tctaaagtaacatacaatttgggacggagggagtata 34967614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 42643142 - 42643110
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggag 33  Q
    |||||||||||||||||||||||| ||||||||    
T  42643142 tctaaagtgacatacaatttgggacggagggag 42643110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 51984007 - 51984043
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtata 37  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  51984007 tctaaagtgacatacaatttgggacggaaggagtata 51984043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 41)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 198
Target Start/End: Complemental strand, 13023701 - 13023583
Alignment:
Q  80 acctgaaaggctgtgaacttaaaagggctttctctctgaaaatttccattttcatcaagccatctctctggtctgaattgctcagcatcttcaccccaca 179  Q
    |||||||| || || ||||| ||||||| ||||  ||||||| |||||||||||||||||||||| || ||||| |||| ||| ||||| |||||||| |    
T  13023701 acctgaaaagccgtaaacttgaaagggcattctggctgaaaaattccattttcatcaagccatctttcaggtctaaattcctctgcatcatcaccccata 13023602  T
Q  180 agaactccatccttcccat 198  Q
     ||| | |||||| |||||    
T  13023601 tgaatttcatcctccccat 13023583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 29938324 - 29938286
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtatatg 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  29938324 tctaaagtgacatacaatttgggacggagggagtatatg 29938286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 6796132 - 6796091
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtatatgata 42  Q
    |||||||||||||||||||||||||||||||| || ||||||    
T  6796132 tctaaagtgacatacaatttgggatggagggaataaatgata 6796091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 16872608 - 16872644
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtata 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  16872608 tctaaagtgacatacaatttgggacggagggagtata 16872644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 19715261 - 19715225
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtata 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  19715261 tctaaagtgacatacaatttgggacggagggagtata 19715225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 8378337 - 8378372
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  8378337 tctaaagtgacatacaatttgggacggagggagtat 8378372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 22578239 - 22578204
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  22578239 tctaaagtgacatacaatttgggacggagggagtat 22578204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 23597295 - 23597260
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  23597295 tctaaagtgacatacaatttgggacggagggagtat 23597260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 23606217 - 23606182
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  23606217 tctaaagtgacatacaatttgggacggagggagtat 23606182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 31873667 - 31873702
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  31873667 tctaaagtgacatacaatttgggacggagggagtat 31873702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 37505022 - 37504987
Alignment:
Q  3 taaagtgacatacaatttgggatggagggagtatat 38  Q
    |||||||||||||||||||||| |||||||||||||    
T  37505022 taaagtgacatacaatttgggacggagggagtatat 37504987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 38896706 - 38896741
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  38896706 tctaaagtgacatacaatttgggacggagggagtat 38896741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 42373254 - 42373289
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  42373254 tctaaagtgacatacaatttgggacggagggagtat 42373289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 5830976 - 5830942
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  5830976 tctaaagtgacatacaatttgggacggagggagta 5830942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 6878546 - 6878512
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  6878546 tctaaagtgacatacaatttgggacggagggagta 6878512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 12000514 - 12000480
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  12000514 tctaaagtgacatacaatttgggacggagggagta 12000480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 198
Target Start/End: Original strand, 13070221 - 13070339
Alignment:
Q  80 acctgaaaggctgtgaacttaaaagggctttctctctgaaaatttccattttcatcaagccatctctctggtctgaattgctcagcatcttcaccccaca 179  Q
    |||||||| || || ||||| |||||| | |||  ||||||||| ||||||||||| ||||||||  | ||||| |||| ||| ||||| |||||||| |    
T  13070221 acctgaaaagcagtaaacttgaaagggttctctgcctgaaaattgccattttcatccagccatcttgcaggtctaaattcctctgcatcatcaccccata 13070320  T
Q  180 agaactccatccttcccat 198  Q
     ||| | |||||| |||||    
T  13070321 tgaatttcatcctccccat 13070339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 14433396 - 14433430
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  14433396 tctaaagtgacatacaatttgggacggagggagta 14433430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 20091223 - 20091257
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  20091223 tctaaagtgacatacaatttgggacggagggagta 20091257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 28074509 - 28074543
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  28074509 tctaaagtgacatacaatttgggacggagggagta 28074543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 35544240 - 35544274
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  35544240 tctaaagtgacatacaatttgggacggagggagta 35544274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 35631061 - 35631027
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  35631061 tctaaagtgacatacaatttgggacggagggagta 35631027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 39284230 - 39284196
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  39284230 tctaaagtgacatacaatttgggacggagggagta 39284196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 40488173 - 40488139
Alignment:
Q  2 ctaaagtgacatacaatttgggatggagggagtat 36  Q
    ||||||||||||||||||||||| |||||||||||    
T  40488173 ctaaagtgacatacaatttgggaaggagggagtat 40488139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 42946667 - 42946701
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  42946667 tctaaagtgacatacaatttgggacggagggagta 42946701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 16421891 - 16421858
Alignment:
Q  4 aaagtgacatacaatttgggatggagggagtata 37  Q
    ||||||||||||||||||||| ||||||||||||    
T  16421891 aaagtgacatacaatttgggacggagggagtata 16421858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 29867290 - 29867257
Alignment:
Q  2 ctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||| |||||||||||||||||||||||||||    
T  29867290 ctaaagcgacatacaatttgggatggagggagta 29867257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 29949131 - 29949094
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtatat 38  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  29949131 tctaaagtgatatacaatttgggacggagggagtatat 29949094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 39645958 - 39645991
Alignment:
Q  3 taaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||| |||||||||||    
T  39645958 taaagtgacatacaatttgggacggagggagtat 39645991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 42827733 - 42827770
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtatat 38  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  42827733 tctaaagcgacatacaatttgggacggagggagtatat 42827770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 4631186 - 4631214
Alignment:
Q  1 tctaaagtgacatacaatttgggatggag 29  Q
    |||||||||||||||||||||||||||||    
T  4631186 tctaaagtgacatacaatttgggatggag 4631214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 9724616 - 9724580
Alignment:
Q  2 ctaaagtgacatacaatttgggatggagggagtatat 38  Q
    |||||| |||||||||||||||| |||||||||||||    
T  9724616 ctaaagcgacatacaatttgggacggagggagtatat 9724580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 18203268 - 18203300
Alignment:
Q  3 taaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||| ||||||||||    
T  18203268 taaagtgacatacaatttgggacggagggagta 18203300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 25838720 - 25838756
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtata 37  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  25838720 tctaaaatgacatacaatttgggacggagggagtata 25838756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 27919676 - 27919708
Alignment:
Q  4 aaagtgacatacaatttgggatggagggagtat 36  Q
    ||||||||||||||||||||| |||||||||||    
T  27919676 aaagtgacatacaatttgggacggagggagtat 27919708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 33012096 - 33012060
Alignment:
Q  2 ctaaagtgacatacaatttgggatggagggagtatat 38  Q
    |||||| |||||||||||||||| |||||||||||||    
T  33012096 ctaaagcgacatacaatttgggacggagggagtatat 33012060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 34908711 - 34908679
Alignment:
Q  3 taaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||| ||||||||||    
T  34908711 taaagtgacatacaatttgggacggagggagta 34908679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 37163781 - 37163817
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtata 37  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  37163781 tctaaagcgacatacaatttgggacggagggagtata 37163817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 38367651 - 38367687
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtata 37  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  38367651 tctaaagtgacatacaatttaggacggagggagtata 38367687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 39628874 - 39628838
Alignment:
Q  2 ctaaagtgacatacaatttgggatggagggagtatat 38  Q
    |||||| |||||||||||||||| |||||||||||||    
T  39628874 ctaaagcgacatacaatttgggacggagggagtatat 39628838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 39638424 - 39638388
Alignment:
Q  2 ctaaagtgacatacaatttgggatggagggagtatat 38  Q
    |||||| |||||||||||||||| |||||||||||||    
T  39638424 ctaaagcgacatacaatttgggacggagggagtatat 39638388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 45780897 - 45780941
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtatatgataagc 45  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  45780897 tctaaagtgacatacaatttgggacggagggagtatatgataagc 45780941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 9818118 - 9818082
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtata 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  9818118 tctaaagtgacatacaatttgggacggagggagtata 9818082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 10720043 - 10720007
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtata 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  10720043 tctaaagtgacatacaatttgggacggagggagtata 10720007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 24924419 - 24924455
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtata 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  24924419 tctaaagtgacatacaatttgggacggagggagtata 24924455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 45823206 - 45823242
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtata 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  45823206 tctaaagtgacatacaatttgggacggagggagtata 45823242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 1643753 - 1643788
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  1643753 tctaaagtgacatacaatttgggacggagggagtat 1643788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 10453155 - 10453190
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  10453155 tctaaagtgacatacaatttgggacggagggagtat 10453190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 22918207 - 22918172
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  22918207 tctaaagtgacatacaatttgggacggagggagtat 22918172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 23059104 - 23059069
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  23059104 tctaaagtgacatacaatttgggacggagggagtat 23059069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 38510157 - 38510196
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtatatga 40  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  38510157 tctaaaatgacatacaatttgggacggagggagtatatga 38510196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 46373250 - 46373285
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  46373250 tctaaagtgacatacaatttgggacggagggagtat 46373285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 47834399 - 47834434
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    ||||||||||||||||||||| ||||||||||||||    
T  47834399 tctaaagtgacatacaatttgagatggagggagtat 47834434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 4513607 - 4513641
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  4513607 tctaaagtgacatacaatttgggacggagggagta 4513641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 13439351 - 13439317
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  13439351 tctaaagtgacatacaatttgggacggagggagta 13439317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 24685675 - 24685709
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  24685675 tctaaagtgacatacaatttgggacggagggagta 24685709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 34275703 - 34275737
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||| ||||||||||||||||||||    
T  34275703 tctaaagtgacatataatttgggatggagggagta 34275737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 35421862 - 35421896
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  35421862 tctaaagtgacatacaatttgggacggagggagta 35421896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 44481020 - 44480986
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  44481020 tctaaagtgacatacaatttgggacggagggagta 44480986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 44894821 - 44894855
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  44894821 tctaaagtgacatacaatttgggacggagggagta 44894855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 47578926 - 47578960
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  47578926 tctaaagtgacatacaatttgggacggagggagta 47578960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 11910679 - 11910716
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtatat 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  11910679 tctaaagtgacatacaatttgggacggggggagtatat 11910716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 25756374 - 25756341
Alignment:
Q  2 ctaaagtgacatacaatttgggatggagggagta 35  Q
    ||||||||||||||||||||||| ||||||||||    
T  25756374 ctaaagtgacatacaatttgggacggagggagta 25756341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 28472319 - 28472356
Alignment:
Q  5 aagtgacatacaatttgggatggagggagtatatgata 42  Q
    |||||||||||||||| ||| |||||||||||||||||    
T  28472319 aagtgacatacaatttaggacggagggagtatatgata 28472356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 42149840 - 42149877
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtatat 38  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  42149840 tctaaagcgacttacaatttgggatggagggagtatat 42149877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 39
Target Start/End: Complemental strand, 34715443 - 34715415
Alignment:
Q  11 catacaatttgggatggagggagtatatg 39  Q
    |||||||||||||||||||||||||||||    
T  34715443 catacaatttgggatggagggagtatatg 34715415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 42121933 - 42121901
Alignment:
Q  3 taaagtgacatacaatttgggatggagggagta 35  Q
    ||||| |||||||||||||||||||||||||||    
T  42121933 taaagggacatacaatttgggatggagggagta 42121901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 52920831 - 52920866
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  52920831 tctaaagtgacatacaatttgggatggagggagtat 52920866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 10555343 - 10555379
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtata 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  10555343 tctaaagtgacatacaatttgggacggagggagtata 10555379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 42507783 - 42507819
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtata 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  42507783 tctaaagtgacatacaatttgggacggagggagtata 42507819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 43587699 - 43587663
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtata 37  Q
    |||||||||||||||||||||||||||| ||||||||    
T  43587699 tctaaagtgacatacaatttgggatggaaggagtata 43587663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 2401254 - 2401219
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  2401254 tctaaagtgacatacaatttgggacggagggagtat 2401219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 4294176 - 4294211
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  4294176 tctaaagtgacatacaatttgggacggagggagtat 4294211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 23621672 - 23621637
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  23621672 tctaaagtgacatacaatttgggacggagggagtat 23621637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 23949785 - 23949820
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  23949785 tctaaagtgacatacaatttgggatggaggaagtat 23949820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 29832790 - 29832825
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    ||||||||||||||||||||||||||||| ||||||    
T  29832790 tctaaagtgacatacaatttgggatggagagagtat 29832825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 30088845 - 30088880
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  30088845 tctaaagtgacatacaatttgggacggagggagtat 30088880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 31648581 - 31648616
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  31648581 tctaaagtgacatacaatttgggacggagggagtat 31648616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 34016801 - 34016766
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  34016801 tctaaagtgacatacaatttgggacggagggagtat 34016766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 48380607 - 48380572
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  48380607 tctaaagtgacatacaatttgggacggagggagtat 48380572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 49236006 - 49236041
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  49236006 tctaaagtgacatacaatttgggacggagggagtat 49236041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 51817191 - 51817226
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  51817191 tctaaagtgacatacaatttgggacggagggagtat 51817226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 55968575 - 55968540
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  55968575 tctaaagtgacatacaatttgggacggagggagtat 55968540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 55984361 - 55984396
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  55984361 tctaaagtgacatacaatttgggacggagggagtat 55984396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 3506044 - 3506010
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    ||||||||||||||||||||| |||||||||||||    
T  3506044 tctaaagtgacatacaatttgagatggagggagta 3506010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 7258156 - 7258190
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  7258156 tctaaagtgacatacaatttgggacggagggagta 7258190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 13880485 - 13880451
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  13880485 tctaaagtgacatacaatttgggacggagggagta 13880451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 22019124 - 22019090
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  22019124 tctaaagtgacatacaatttgggacggagggagta 22019090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 25771225 - 25771259
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  25771225 tctaaagtgacatacaatttgggacggagggagta 25771259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 32860866 - 32860900
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  32860866 tctaaagtgacatacaatttgggacggagggagta 32860900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 34447666 - 34447632
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  34447666 tctaaagtgacatacaatttgggacggagggagta 34447632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 35877090 - 35877124
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  35877090 tctaaagtgacatacaatttgggacggagggagta 35877124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 42179696 - 42179730
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  42179696 tctaaagtgacatacaatttgggacggagggagta 42179730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 54270800 - 54270758
Alignment:
Q  4 aaagtgacatacaatttgggatggagggagtatatgataagca 46  Q
    |||| |||||||||||||||| ||||||||||||| |||||||    
T  54270800 aaagcgacatacaatttgggacggagggagtatataataagca 54270758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 56038663 - 56038697
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  56038663 tctaaagtgacatacaatttgggacggagggagta 56038697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 17609228 - 17609265
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtatat 38  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  17609228 tctaaagtgacatacaatttgggactgagggagtatat 17609265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 35734108 - 35734071
Alignment:
Q  35 atatgataagcaattatgctacaagcgcctaattaagt 72  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  35734108 atatgataagcacttatgctacaagcgcttaattaagt 35734071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 41858745 - 41858712
Alignment:
Q  3 taaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||| |||||||||||    
T  41858745 taaagtgacatacaatttgggacggagggagtat 41858712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 1788841 - 1788877
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtata 37  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  1788841 tctaaagcgacatacaatttgggacggagggagtata 1788877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 27383681 - 27383717
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtata 37  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  27383681 tctaaagttacatacaatttgggacggagggagtata 27383717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 34002205 - 34002165
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtatatgat 41  Q
    ||||||| |||||||||||||||| ||||||||||| ||||    
T  34002205 tctaaagcgacatacaatttgggacggagggagtatttgat 34002165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 44710082 - 44710117
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  44710082 tctaaagtgacatacaatttgggatggagggagtat 44710117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 325379 - 325416
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtatat 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  325379 tctaaagtgacatacaatttgggacggagggagtatat 325416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 3628632 - 3628669
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtatat 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  3628632 tctaaagtgacatacaatttgggacggagggagtatat 3628669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 36443547 - 36443510
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtatat 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  36443547 tctaaagtgacatacaatttgggacggagggagtatat 36443510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 19002939 - 19002904
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  19002939 tctaaagtgacatacaatttgggacggagggagtat 19002904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 22061013 - 22060978
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  22061013 tctaaagtgacatacaatttgggacggagggagtat 22060978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 31909825 - 31909860
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  31909825 tctaaagtgacatacaatttgggacggagggagtat 31909860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 39407810 - 39407775
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  39407810 tctaaagtgacatacaatttgggacggagggagtat 39407775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 39927738 - 39927773
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  39927738 tctaaagtgacatacaatttgggacggagggagtat 39927773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 40833502 - 40833467
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  40833502 tctaaagtgacatacaatttgggacggagggagtat 40833467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 13375345 - 13375311
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  13375345 tctaaagtgacatacaatttgggacggagggagta 13375311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 14527783 - 14527749
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  14527783 tctaaagtgacatacaatttgggacggagggagta 14527749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 14943511 - 14943545
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  14943511 tctaaagtgacatacaatttgggacggagggagta 14943545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 26850070 - 26850104
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  26850070 tctaaagtgacatacaatttgggaaggagggagta 26850104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 27341837 - 27341871
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    ||||||||||||||||||||||||| |||||||||    
T  27341837 tctaaagtgacatacaatttgggatagagggagta 27341871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 28786971 - 28787005
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  28786971 tctaaagtgacatacaatttgggacggagggagta 28787005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 40171785 - 40171819
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  40171785 tctaaagtgacatacaatttgggacggagggagta 40171819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 42056070 - 42056036
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  42056070 tctaaagtgacatacaatttgggacggagggagta 42056036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 19240863 - 19240900
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtatat 38  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  19240863 tctaaagtgacatacaatttgggacggacggagtatat 19240900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 27244952 - 27244919
Alignment:
Q  4 aaagtgacatacaatttgggatggagggagtata 37  Q
    ||||||||||||||||||||| ||||||||||||    
T  27244952 aaagtgacatacaatttgggacggagggagtata 27244919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 6312250 - 6312214
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtata 37  Q
    |||||| |||||||||||||||||||||| |||||||    
T  6312250 tctaaaatgacatacaatttgggatggagagagtata 6312214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 19166429 - 19166457
Alignment:
Q  1 tctaaagtgacatacaatttgggatggag 29  Q
    |||||||||||||||||||||||||||||    
T  19166429 tctaaagtgacatacaatttgggatggag 19166457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 23494474 - 23494438
Alignment:
Q  2 ctaaagtgacatacaatttgggatggagggagtatat 38  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  23494474 ctaaagtgacatacaatttgggacggagggaatatat 23494438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 30780088 - 30780056
Alignment:
Q  3 taaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||| ||||||||||    
T  30780088 taaagtgacatacaatttgggacggagggagta 30780056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 41095955 - 41095923
Alignment:
Q  5 aagtgacatacaatttgggatggagggagtata 37  Q
    |||||||||||||||||||| ||||||||||||    
T  41095955 aagtgacatacaatttgggacggagggagtata 41095923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 19961073 - 19961115
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtatatgataa 43  Q
    |||||||||||||||||||||||| ||||||||||||| ||||    
T  19961073 tctaaagtgacatacaatttgggacggagggagtatatcataa 19961115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 45674321 - 45674355
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||||||||||||||    
T  45674321 tctaaagtgacatacaatttgggatggagggagta 45674355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 25904156 - 25904193
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtatat 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  25904156 tctaaagtgacatacaatttgggacggagggagtatat 25904193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 29652027 - 29651990
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtatat 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  29652027 tctaaagtgacatacaatttgggacggagggagtatat 29651990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 52060519 - 52060556
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtatat 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  52060519 tctaaagtgacatacaatttgggacggagggagtatat 52060556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 8108469 - 8108433
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtata 37  Q
    |||||||||||||||| ||||||||||||||||||||    
T  8108469 tctaaagtgacatacattttgggatggagggagtata 8108433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 34817155 - 34817191
Alignment:
Q  4 aaagtgacatacaatttgggatggagggagtatatga 40  Q
    ||||||||||||||||||||| |||||||||||||||    
T  34817155 aaagtgacatacaatttgggacggagggagtatatga 34817191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 43599604 - 43599568
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtata 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  43599604 tctaaagtgacatacaatttgggacggagggagtata 43599568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 3671628 - 3671663
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  3671628 tctaaagtgacatacaatttgggacggagggagtat 3671663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 23782099 - 23782060
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtatatga 40  Q
    |||||||||||||||||||||||| |||| ||||||||||    
T  23782099 tctaaagtgacatacaatttgggacggagtgagtatatga 23782060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 38783689 - 38783724
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  38783689 tctaaagtgacatacaatttgggacggagggagtat 38783724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 43175768 - 43175733
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  43175768 tctaaagtgacatacaatttgggacggagggagtat 43175733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 45824133 - 45824168
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  45824133 tctaaagtgacatacaatttgggacggagggagtat 45824168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 24089362 - 24089328
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  24089362 tctaaagtgacatacaatttgggacggagggagta 24089328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 24978863 - 24978829
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  24978863 tctaaagtgacatacaatttgggacggagggagta 24978829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 27848898 - 27848932
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  27848898 tctaaagtgacatacaatttgggacggagggagta 27848932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 28227005 - 28226971
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  28227005 tctaaagtgacatacaatttgggacggagggagta 28226971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 33840048 - 33840082
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||||||| ||||||    
T  33840048 tctaaagtgacatacaatttgggatggatggagta 33840082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 34663464 - 34663430
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  34663464 tctaaagtgacatacaatttgggacggagggagta 34663430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 41751135 - 41751101
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  41751135 tctaaagtgacatacaatttgggacggagggagta 41751101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 44048132 - 44048098
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  44048132 tctaaagtgacatacaatttgggacggagggagta 44048098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 48333744 - 48333710
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  48333744 tctaaagtgacatacaatttgggacggagggagta 48333710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 50622749 - 50622783
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||||||| ||||||    
T  50622749 tctaaagtgacatacaatttgggatggaaggagta 50622783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 51865723 - 51865689
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  51865723 tctaaagtgacatacaatttgggacggagggagta 51865689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 8104264 - 8104227
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtatat 38  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  8104264 tctaaagtgacatacaatttgggacggatggagtatat 8104227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 21216916 - 21216949
Alignment:
Q  3 taaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||| |||||||||||    
T  21216916 taaagtgacatacaatttgggacggagggagtat 21216949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 38483580 - 38483617
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtatat 38  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  38483580 tctaaagtgacatacaatttgggacggatggagtatat 38483617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 54080358 - 54080391
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  54080358 tctaaagtgacatacaatttgggacggagggagt 54080391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 3645953 - 3645989
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtata 37  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  3645953 tctaaagtgacatacaatttgggacggaaggagtata 3645989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 7674157 - 7674189
Alignment:
Q  4 aaagtgacatacaatttgggatggagggagtat 36  Q
    ||||||||||||||||||||| |||||||||||    
T  7674157 aaagtgacatacaatttgggacggagggagtat 7674189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 37
Target Start/End: Original strand, 48962824 - 48962852
Alignment:
Q  9 gacatacaatttgggatggagggagtata 37  Q
    |||||||||||||||||||||||||||||    
T  48962824 gacatacaatttgggatggagggagtata 48962852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 54103963 - 54103995
Alignment:
Q  3 taaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||| ||||||||||    
T  54103963 taaagtgacatacaatttgggacggagggagta 54103995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 12360821 - 12360784
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtatat 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  12360821 tctaaagtgacatacaatttgggacggagggagtatat 12360784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 34163156 - 34163119
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtatat 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  34163156 tctaaagtgacatacaatttgggacggagggagtatat 34163119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 9248959 - 9248919
Alignment:
Q  4 aaagtgacatacaatttgggatggagggagtatatgataag 44  Q
    |||| |||||||||||||||| |||||||||||||||||||    
T  9248959 aaagcgacatacaatttgggacggagggagtatatgataag 9248919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 29619465 - 29619501
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtata 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  29619465 tctaaagtgacatacaatttgggacggagggagtata 29619501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 3633955 - 3633920
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  3633955 tctaaagtgacatacaatttgggacggagggagtat 3633920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 34382069 - 34382104
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  34382069 tctaaagtgacatacaatttgggacggagggagtat 34382104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 35869963 - 35869928
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  35869963 tctaaagtgacatacaatttgggacggagggagtat 35869928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 42940798 - 42940763
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  42940798 tctaaagtgacatacaatttgggacggagggagtat 42940763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 4456427 - 4456393
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  4456427 tctaaagtgacatacaatttgggacggagggagta 4456393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 5378213 - 5378247
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  5378213 tctaaagtgacatacaatttgggacggagggagta 5378247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 7363345 - 7363379
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  7363345 tctaaagtgacatacaatttgggacggagggagta 7363379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 29816238 - 29816204
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  29816238 tctaaagtgacatacaatttgggacggagggagta 29816204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 34607043 - 34607080
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtatat 38  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  34607043 tctaaagtggcatacaatttgggacggagggagtatat 34607080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 4060825 - 4060857
Alignment:
Q  4 aaagtgacatacaatttgggatggagggagtat 36  Q
    ||||||||||||||||||||| |||||||||||    
T  4060825 aaagtgacatacaatttgggacggagggagtat 4060857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 25538072 - 25538036
Alignment:
Q  2 ctaaagtgacatacaatttgggatggagggagtatat 38  Q
    |||||| |||||||||||||||| |||||||||||||    
T  25538072 ctaaagcgacatacaatttgggacggagggagtatat 25538036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 36347454 - 36347494
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtatatgat 41  Q
    ||||||||| |||||||||||||| ||||||||||| ||||    
T  36347454 tctaaagtggcatacaatttgggacggagggagtatttgat 36347494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 10364719 - 10364755
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtata 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  10364719 tctaaagtgacatacaatttgggacggagggagtata 10364755  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 2603643 - 2603678
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  2603643 tctaaagtgacatacaatttgggacggagggagtat 2603678  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 4657857 - 4657822
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||| |||||||||||||||||||||||||    
T  4657857 tctaaagtgatatacaatttgggatggagggagtat 4657822  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 6835746 - 6835711
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  6835746 tctaaagtgacatacaatttgggacggagggagtat 6835711  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 8201494 - 8201459
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  8201494 tctaaagtgacatacaatttgggacggagggagtat 8201459  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 15497875 - 15497840
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  15497875 tctaaagtgacatacaatttgggacggagggagtat 15497840  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 1352505 - 1352471
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  1352505 tctaaagtgacatacaatttgggacggagggagta 1352471  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 9461607 - 9461573
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  9461607 tctaaagtgacatacaatttgggacggagggagta 9461573  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 9961349 - 9961315
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  9961349 tctaaagtgacatacaatttgggacggagggagta 9961315  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 11172919 - 11172885
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  11172919 tctaaagtgacatacaatttgggacggagggagta 11172885  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 3787124 - 3787091
Alignment:
Q  3 taaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||||||||||||||| |||||||||||    
T  3787124 taaagtgacatacaatttgggacggagggagtat 3787091  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 17941642 - 17941605
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtatat 38  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  17941642 tctaaagtgatatacaatttgggacggagggagtatat 17941605  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 32393714 - 32393746
Alignment:
Q  3 taaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||| ||||||||||    
T  32393714 taaagtgacatacaatttgggacggagggagta 32393746  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 35039856 - 35039824
Alignment:
Q  11 catacaatttgggatggagggagtatatgataa 43  Q
    |||||||||||||| ||||||||||||||||||    
T  35039856 catacaatttgggacggagggagtatatgataa 35039824  T

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Target: scaffold0475 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 5153 - 5118
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagtat 36  Q
    |||||||||| |||||||||||||||||||||||||    
T  5153 tctaaagtgatatacaatttgggatggagggagtat 5118  T

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Target: scaffold0264 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 18928 - 18962
Alignment:
Q  2 ctaaagtgacatacaatttgggatggagggagtat 36  Q
    ||||||||||||||||||||||| |||||||||||    
T  18928 ctaaagtgacatacaatttgggacggagggagtat 18962  T

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Target: scaffold0160 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 26008 - 26042
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  26008 tctaaagtgacatacaatttgggacggagggagta 26042  T

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Target: scaffold0037 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 98896 - 98862
Alignment:
Q  1 tctaaagtgacatacaatttgggatggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  98896 tctaaagtgacatacaatttgggacggagggagta 98862  T

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Target: scaffold0154 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 4229 - 4265
Alignment:
Q  2 ctaaagtgacatacaatttgggatggagggagtatat 38  Q
    |||||| |||||||||||||||| |||||||||||||    
T  4229 ctaaagcgacatacaatttgggacggagggagtatat 4265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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