View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14706_high_31 (Length: 236)
Name: NF14706_high_31
Description: NF14706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14706_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 22010273 - 22010493
Alignment:
| Q |
1 |
aaactcatgttgagtttggttgattcttttgcagttagaagaccaaactgtgatggctacggttcattgtgttacgatcctcgatttgttggtggagatg |
100 |
Q |
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| T |
22010273 |
aaactcatgttgagtttggttgattcttttgcagttagaagaccaaactgtgatggctacggttcattgtgttacgatcctcgatttgttggtggagacg |
22010372 |
T |
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| Q |
101 |
gtgtgatgttctacttccatggagccaaaggaggaaacttcgccatagtttcagacgatgatttccaaatcaacgcacacttcatcggtactcgacctca |
200 |
Q |
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| T |
22010373 |
gtgtgatgttctacttccatggagccaaaggaggaaacttcgccatagtttcagacgatgatttccaaatcaatgcacacttcatcggtactcgacctca |
22010472 |
T |
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| Q |
201 |
gggaaggactcgcgattatac |
221 |
Q |
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| T |
22010473 |
gggaaggactcgcgattatac |
22010493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 24 - 215
Target Start/End: Original strand, 21993077 - 21993268
Alignment:
| Q |
24 |
ttcttttgcagttagaagaccaaactgtgatggctacggttcattgtgttacgatcctcgatttgttggtggagatggtgtgatgttctacttccatgga |
123 |
Q |
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||||||||||||||||||| ||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||| |
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| T |
21993077 |
ttcttttgcagttagaagagcaaactgtgatggttacggatcattgtgctacgatcctcgctttgttggtggagacggtgtgatgttctacttccacgga |
21993176 |
T |
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| Q |
124 |
gccaaaggaggaaacttcgccatagtttcagacgatgatttccaaatcaacgcacacttcatcggtactcgacctcagggaaggactcgcga |
215 |
Q |
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| T |
21993177 |
gccaaaggaggaaactttgccatagtttcagacgacgaattccaaatcaatgcacacttcatcggtactcggcctcagggaaggactcgcga |
21993268 |
T |
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