View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14706_high_34 (Length: 226)
Name: NF14706_high_34
Description: NF14706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14706_high_34 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 11 - 210
Target Start/End: Original strand, 1899931 - 1900130
Alignment:
| Q |
11 |
agcagcagagagaagaagacaaaaatctgtgcctacagagttggaaaagtgcgtcgaagctgtccaaagcaagacatctagaaccgagcacaaggcaaca |
110 |
Q |
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| T |
1899931 |
agcagcaaagagaagaagacaaaaatctgtgcctatagagttggaaaagtgcgtcgaagctgtccaaaacaagacatctagaaacgagcacaaggcaaca |
1900030 |
T |
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| Q |
111 |
ttcacatgaaagcagttcgtccaccccttctggtatgtctatcataagcagtagagaatttgtccaccaaatcattcattgcactacaggaagacatatc |
210 |
Q |
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| T |
1900031 |
ttcacatgaaagcagttcgcccaccccttctggtatgtctatcataagcagtagagaatttgtccaccaaatcattcattgcactacaggaagacatatc |
1900130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 11 - 210
Target Start/End: Original strand, 1909377 - 1909576
Alignment:
| Q |
11 |
agcagcagagagaagaagacaaaaatctgtgcctacagagttggaaaagtgcgtcgaagctgtccaaagcaagacatctagaaccgagcacaaggcaaca |
110 |
Q |
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| T |
1909377 |
agcagcaaagagaagaagacaaaaatctgtgcctatagagttggaaaagtgcgtcgaagctgtccaaaacaagacatctagaaacgagcacaaggcaaca |
1909476 |
T |
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| Q |
111 |
ttcacatgaaagcagttcgtccaccccttctggtatgtctatcataagcagtagagaatttgtccaccaaatcattcattgcactacaggaagacatatc |
210 |
Q |
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| T |
1909477 |
ttcacatgaaagcagttcgcccaccccttctggtatgtctatcataagcagtagagaatttgtccaccaaatcattcattgcactacaggaagacatatc |
1909576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 11 - 206
Target Start/End: Original strand, 1893014 - 1893208
Alignment:
| Q |
11 |
agcagcagagagaagaagacaaaaatctgtgcctacagagttggaaaagtgcgtcgaagctgtccaaagcaagacatctagaaccgagcacaaggcaaca |
110 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
1893014 |
agcagcaaagagaagaagacaaaaatctgtgcctacagagttggaaaagtgcgtcgaagctgtccaaaacaagacatctagaaacgagcacaaggcaaca |
1893113 |
T |
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| Q |
111 |
ttcacatgaaagcagttcgtccaccccttctggtatgtctatcataagcagtagagaatttgtccaccaaatcattcattgcactacaggaagaca |
206 |
Q |
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| T |
1893114 |
ttcac-tgaaagcagttcgtccaccccttctggtatgtctatcataagcagtagagaatttgtccaccaaatcattcattgcactacaggaagaca |
1893208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 2935373 - 2935189
Alignment:
| Q |
19 |
agagaagaagacaaaaatctgtgcctacagagttggaaaagtgcgtcgaagctgtccaaagcaagacatctagaaccgagca-caaggcaacattcacat |
117 |
Q |
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| T |
2935373 |
agagaagaagacaaaaatttgtgcctacagagtgggaaaagtgcatcgaagctgtccaaagcaagacatctagaaacgagcaacaaggcgacattcacat |
2935274 |
T |
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| Q |
118 |
gaaagcagttcgtccaccccttctggtatgtctatcataagcagtagagaatttgtccaccaaatcattcattgcactacaggaagaca |
206 |
Q |
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| T |
2935273 |
gaaagcagttcgtccaccccttctggtatgtctatcataagcagtagagaatttgtccaccaaat----cattgcactacaggaagaca |
2935189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 2930321 - 2930198
Alignment:
| Q |
19 |
agagaagaagacaaaaatctgtgcctacagagttggaaaagtgcgtcgaagctgtccaaagcaagacatctagaaccgagc-acaaggcaacattcacat |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
2930321 |
agagaagaagacaaaaatctgtgcctacagagttggaaacgtgcgtcgaagctgtccaaagcaagacatctagaaacgagcaacaaggcaacattcacat |
2930222 |
T |
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| Q |
118 |
gaaagcagttcgtccaccccttct |
141 |
Q |
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|||||||||| ||||||||||||| |
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| T |
2930221 |
gaaagcagtttgtccaccccttct |
2930198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 131 - 206
Target Start/End: Original strand, 1902579 - 1902654
Alignment:
| Q |
131 |
ccaccccttctggtatgtctatcataagcagtagagaatttgtccaccaaatcattcattgcactacaggaagaca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1902579 |
ccaccccttctggtatgtctatcataagcagtagagaatttgtccaccaaatcattcattgcactacaggaagaca |
1902654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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