View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14706_high_5 (Length: 430)
Name: NF14706_high_5
Description: NF14706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14706_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 31214112 - 31213814
Alignment:
| Q |
1 |
tcttctgtaaagagaatgctggagatgaaagagaaagaattatggttgcagttgcagcagaaactttttgacgagnnnnnnnngtattttgagcttgaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31214112 |
tcttctgtaaagagaatgctggagatgaaagagaaagaattatggttgcagttgcagcagaaactttttgacgagaaaaaaatgtattttgagcttgaaa |
31214013 |
T |
|
| Q |
101 |
tggaacaaaagcggaaatccctcattaagaagtttaggaggcaggaggaagccttagagtataggaaagctgaagtcaaccttagggaaaccaagattgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
31214012 |
tggaacaaaagcggaaatccctcattaagaagtttaggagacaggaggaagccttagagtatagggaagctgaagtcaaccttagggaaaccaaggttgt |
31213913 |
T |
|
| Q |
201 |
tgaaaaagagcaagttgtgagtatgatctctgagagaataaaggttcaaaagcaaggcacttgtaaatatgttaaaatctttgaaggagatggaaatgac |
300 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31213912 |
tgaaaaagagcaagttgtgaggatgatctctgagagaataaaggttcaaaagcaaggcacttgt-aatatgttaaaatctttgaaggagatggaaatgac |
31213814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 31219867 - 31219569
Alignment:
| Q |
1 |
tcttctgtaaagagaatgctggagatgaaagagaaagaattatggttgcagttgcagcagaaactttttgacgagnnnnnnnngtattttgagcttgaaa |
100 |
Q |
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| T |
31219867 |
tcttctgtaaagagaatgctggagatgaaagagaaagaattatggttgcagttgcagcagaaactttttgacgagaaaaaaatgtattttgagcttgaaa |
31219768 |
T |
|
| Q |
101 |
tggaacaaaagcggaaatccctcattaagaagtttaggaggcaggaggaagccttagagtataggaaagctgaagtcaaccttagggaaaccaagattgt |
200 |
Q |
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| T |
31219767 |
tggaacaaaagcggaaatccctcattaagaagtttaggagacaggaggaagccttagagtatagggaagctgaagtcaaccttagggaaaccaaggttgt |
31219668 |
T |
|
| Q |
201 |
tgaaaaagagcaagttgtgagtatgatctctgagagaataaaggttcaaaagcaaggcacttgtaaatatgttaaaatctttgaaggagatggaaatgac |
300 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31219667 |
tgaaaaagagcaagttgtgaggatgatctctgagagaataaaggttcaaaagcaaggcacttgt-aatatgttaaaatctttgaaggagatggaaatgac |
31219569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 289
Target Start/End: Complemental strand, 31213800 - 31213741
Alignment:
| Q |
229 |
tctgagagaataaaggttcaaaagcaaggcacttgtaaatatgttaaaatctttgaaggag |
289 |
Q |
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| T |
31213800 |
tctgagagaataaaggttcaaaa-taagggacttgaaaataatttgaaatctttgaaggag |
31213741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 289
Target Start/End: Complemental strand, 31219555 - 31219496
Alignment:
| Q |
229 |
tctgagagaataaaggttcaaaagcaaggcacttgtaaatatgttaaaatctttgaaggag |
289 |
Q |
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| T |
31219555 |
tctgagagaataaaggttcaaaa-taagggacttgaaaataatttgaaatctttgaaggag |
31219496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 47895434 - 47895723
Alignment:
| Q |
1 |
tcttctgtaaagagaatgctggagatgaaagagaaagaattatggttgcagttgcagcagaaactttttgacgagnnnnnnnn-gtattttgagcttgaa |
99 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
47895434 |
tcttctgtaaagagaatgctggagatgaaagagaaagaattatggttgcagttgcagcagaaactttttgacgaggaaaaaaaagtattttgagcttgaa |
47895533 |
T |
|
| Q |
100 |
atggaacaaaagcggaaatccctcattaagaagtttaggaggcaggaggaagccttagagtataggaaagctgaagtcaaccttagggaaaccaagattg |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47895534 |
atggaacaaaagcggaaatccctcattaagaagtttaggagacaggaggaagccttagagtataggaaagctgaagtcaaccttagggaaaccaagattg |
47895633 |
T |
|
| Q |
200 |
ttgaaaaagagcaagttgtgagtatgatctctgagagaataaaggttcaaaagcaaggcacttgtaaatatgttaaaatctttgaaggag |
289 |
Q |
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| T |
47895634 |
ttgaaaaagagcaagttgtgagtatgatctctgagagaatgaaggttcaaaagcaaggcacttgtaaatatgttaaaatctttgaaggag |
47895723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 88 - 244
Target Start/End: Complemental strand, 4960170 - 4960014
Alignment:
| Q |
88 |
tttgagcttgaaatggaacaaaagcggaaatccctcattaagaagtttaggaggcaggaggaagccttagagtataggaaagctgaagtcaaccttaggg |
187 |
Q |
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||||||||||||||||||||||||||||||||||| | || ||||||| || ||||||||||||| ||||||||| || |||||||||| ||||| |
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| T |
4960170 |
tttgagcttgaaatggaacaaaagcggaaatccctagctgaggagtttagcagcaaggaggaagccttggagtatagggaaatcgaagtcaaccataggg |
4960071 |
T |
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| Q |
188 |
aaaccaagattgttgaaaaagagcaagttgtgagtatgatctctgagagaataaagg |
244 |
Q |
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|||| ||| ||| || ||||||||| | |||||| || |||||||||||||||| |
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| T |
4960070 |
aaacgaaggttggaaaagaagagcaagctttgagtacgaagtctgagagaataaagg |
4960014 |
T |
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