View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14706_high_7 (Length: 409)
Name: NF14706_high_7
Description: NF14706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14706_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 5e-72; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 214 - 407
Target Start/End: Complemental strand, 38030097 - 38029904
Alignment:
| Q |
214 |
aagaaacaagattatatattatactaacatctaagccttctaaacgtgtttgttccacaggccttcttgctgatcattaccactcttcaagatcagttcc |
313 |
Q |
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| T |
38030097 |
aagaaacaagattatatattatactaacatctaagccttctaaacgcgtttgttccataggccttcttgctgatcattaccactcttcaagatcagttcc |
38029998 |
T |
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| Q |
314 |
ttaatttccagcggaggtttctttttccactcctttgcacgctcccatcttgccagcctcgtcatcccaatggaaggcccataatccatattca |
407 |
Q |
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| T |
38029997 |
ttaatttcctgcggaggattcatatcccacttctttgcacgctcccatcgttccagcctcgtcagcccaatgctaggcccataatccatgttca |
38029904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 38030324 - 38030111
Alignment:
| Q |
17 |
aagaaactactaaacgatgcacaaaaacaaacacacattttagatatatca-aatccaaaacacatatatagaagtttctatcatatcaatcagcaacat |
115 |
Q |
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| T |
38030324 |
aagaaactactaaacgatgcacaaaaacaaacacac-taacaga-aaatgatttttcaaaacacatatatagaagtttctatcatatcaaccagcaacat |
38030227 |
T |
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| Q |
116 |
tcacttaacagccaattaaca-tcgataaaacttgtgtaacaaaacacactaaccgaaactgattttcccaaagaaaaatctaagcaagaaggtccataa |
214 |
Q |
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| T |
38030226 |
tcacttaagagccaattaacatttgataaaacttgtaaaacaaaacacactaacagaaactgattttccctaagaaaaatctaaacaaaaaggtccataa |
38030127 |
T |
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| Q |
215 |
agaaacaagattatat |
230 |
Q |
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| T |
38030126 |
agaaacaagattatat |
38030111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 38024905 - 38024832
Alignment:
| Q |
16 |
aaagaaactactaaacgatgcacaaaaacaaacacacattttagatatatcaaatccaaaacacatatatagaa |
89 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38024905 |
aaagaaactactaaacgatgcaaaaaaacaaacacacattttagatatatcaaatccaaaacacatatatagaa |
38024832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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