View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14706_low_1 (Length: 633)

Name: NF14706_low_1
Description: NF14706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14706_low_1
NF14706_low_1
[»] chr5 (12 HSPs)
chr5 (365-610)||(27841190-27841435)
chr5 (157-331)||(27840981-27841156)
chr5 (1-83)||(27840895-27840977)
chr5 (378-504)||(34686396-34686522)
chr5 (378-473)||(34679271-34679366)
chr5 (372-538)||(34429610-34429776)
chr5 (375-474)||(34650354-34650453)
chr5 (378-474)||(34421379-34421475)
chr5 (381-474)||(34427563-34427660)
chr5 (378-474)||(18271586-18271682)
chr5 (157-230)||(43442236-43442310)
chr5 (157-198)||(32670590-32670631)
[»] chr1 (4 HSPs)
chr1 (381-504)||(2067572-2067695)
chr1 (157-230)||(6122834-6122908)
chr1 (157-230)||(31794226-31794300)
chr1 (157-228)||(44961807-44961879)
[»] chr7 (6 HSPs)
chr7 (381-453)||(45161200-45161272)
chr7 (157-229)||(41519227-41519299)
chr7 (157-230)||(7309396-7309469)
chr7 (157-229)||(44628146-44628218)
chr7 (157-230)||(24438209-24438283)
chr7 (157-229)||(25132341-25132413)
[»] chr4 (3 HSPs)
chr4 (157-230)||(8030166-8030240)
chr4 (157-229)||(7949416-7949489)
chr4 (157-228)||(31826651-31826723)
[»] chr2 (4 HSPs)
chr2 (157-230)||(21195638-21195712)
chr2 (157-228)||(40791453-40791524)
chr2 (157-229)||(1435105-1435177)
chr2 (163-230)||(38551808-38551876)
[»] chr8 (3 HSPs)
chr8 (157-227)||(33727835-33727906)
chr8 (157-230)||(11819816-11819890)
chr8 (157-230)||(27750770-27750844)
[»] chr6 (1 HSPs)
chr6 (158-229)||(28841455-28841527)


Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-126; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 365 - 610
Target Start/End: Original strand, 27841190 - 27841435
Alignment:
Q  365 atttgacatgttgtcataccacaaaatgaggatcaacaactcccttctgaatgtggatagcacccaaggcagcatctcccaaaactactccccctgttgc 464  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27841190 atttgacatgttgtcataccacaaaatgaggatcaacaactcccttctgaatgtggatagcacccaacgcagcatctcccaaaactactccccctgttgc 27841289  T
Q  465 tcgaagttgagatgctgagtcacgcacctaaaatttaaaagttaaaaatatttttaggttgataactatgttaatcaaggaaagttgttaaaaaatatac 564  Q
    |||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27841290 tcgaagttgagaagctgaatcacgcacctataatttaaaagttaaaaatatttttaggttgataactatgttaatcaaggaaagttgttaaaaaatatac 27841389  T
Q  565 taatcgaatttaacattattcttattactagaacggaagtatcctt 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  27841390 taatcgaatttaacattattcttattactagaacggaagtatcctt 27841435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 157 - 331
Target Start/End: Original strand, 27840981 - 27841156
Alignment:
Q  157 aagaagctaaattagcccatcaaaattaacac-atagagaatcgaactggagaccttgagaaagagcacactcccggataataaaaagtggcatgaaata 255  Q
    ||||||||||||||||||||| |||||||||| | |||||||||||| ||||| || ||| | ||||||||| || ||||||||||||||||||||||||    
T  27840981 aagaagctaaattagcccatccaaattaacaccagagagaatcgaaccggagatctcgaggaggagcacacttccagataataaaaagtggcatgaaata 27841080  T
Q  256 tttacttccatatcataatataaaaagtggcatgaaatatgcttatttatctttgtattattgaattaggggatgc 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27841081 tttacttccatatcataatataaaaagtggcatgaaatatgcttatttatctttgtattattgaattaggggatgc 27841156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 27840895 - 27840977
Alignment:
Q  1 aatactgaacaaaaacaactaaatcacaaaaatccacaactctttttagaattttagtaaatccattgagtttatattattat 83  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27840895 aatactgaacaaaaacaactaaatcacaaaaatccacaattctttttagaattttagtaaatccattgagtttatattattat 27840977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 378 - 504
Target Start/End: Complemental strand, 34686522 - 34686396
Alignment:
Q  378 tcataccacaaaatgaggatcaacaactcccttctgaatgtggatagcacccaaggcagcatctcccaaaactactccccctgttgctcgaagttgagat 477  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||| |||||| | ||||||||| ||||||||| | ||||||||||||||||||  |    
T  34686522 tcataccacaaaatgaggatcaacaactcccttttgaatgtgaatagaacccaatgtagcatctcctaaaactacttctcctgttgctcgaagttgaact 34686423  T
Q  478 gctgagtcacgcacctaaaatttaaaa 504  Q
    || | |||||||||||| |||| ||||    
T  34686422 gccgcgtcacgcacctataattcaaaa 34686396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 378 - 473
Target Start/End: Complemental strand, 34679366 - 34679271
Alignment:
Q  378 tcataccacaaaatgaggatcaacaactcccttctgaatgtggatagcacccaaggcagcatctcccaaaactactccccctgttgctcgaagttg 473  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||| |||||||| ||||| ||||| |||||    
T  34679366 tcataccacaaaatgaggatcaacaactccattctgaatgtggatagcacccaaagtagcatctcccaatactactcctcctgtggctcggagttg 34679271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 372 - 538
Target Start/End: Original strand, 34429610 - 34429776
Alignment:
Q  372 atgttgtcataccacaaaatgaggatcaacaactcccttctgaatgtggatagcacccaaggcagcatctcccaaaactactccccctgttgctcgaagt 471  Q
    ||||| |||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| | ||||||||||||||  ||| | || |||||||| |||    
T  34429610 atgttatcataccacaaaatgaggatcaaccactcctttctggatgtggatagcacccaatgtagcatctcccaaaatcacttctccagttgctcggagt 34429709  T
Q  472 tgagatgctgagtcacgcacctaaaatttaaaagttaaaaatatttttaggttgataactatgttaa 538  Q
    |||   |||||||| |||||||  |||| ||||  || |||||| || || |||||||| |||||||    
T  34429710 tgaacagctgagtcgcgcacctttaattcaaaaagtataaatatcttgagattgataaccatgttaa 34429776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 375 - 474
Target Start/End: Complemental strand, 34650453 - 34650354
Alignment:
Q  375 ttgtcataccacaaaatgaggatcaacaactcccttctgaatgtggatagcacccaaggcagcatctcccaaaactactccccctgttgctcgaagttga 474  Q
    |||||||||||||||||||||||||||||||||||| |  |||||||||||||| || | || || | |||||||||||||| |||||||||||||||||    
T  34650453 ttgtcataccacaaaatgaggatcaacaactcccttttagatgtggatagcacctaatgtagaattttccaaaactactccctctgttgctcgaagttga 34650354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 378 - 474
Target Start/End: Original strand, 34421379 - 34421475
Alignment:
Q  378 tcataccacaaaatgaggatcaacaactcccttctgaatgtggatagcacccaaggcagcatctcccaaaactactccccctgttgctcgaagttga 474  Q
    ||||||||||||||||||||||||||||||  | |||||||||||||||||||    || || ||||||||||||| | || |||||||||||||||    
T  34421379 tcataccacaaaatgaggatcaacaactcctctttgaatgtggatagcacccactttagtatatcccaaaactacttctccagttgctcgaagttga 34421475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 381 - 474
Target Start/End: Original strand, 34427563 - 34427660
Alignment:
Q  381 taccacaaaatgaggatcaaca----actcccttctgaatgtggatagcacccaaggcagcatctcccaaaactactccccctgttgctcgaagttga 474  Q
    ||||||||||||||||||||||    ||||||||||| ||||| ||||||||||| | ||||||| ||||||||||| |||| |||||||| ||||||    
T  34427563 taccacaaaatgaggatcaacaaacaactcccttctggatgtgaatagcacccaatgtagcatcttccaaaactacttccccggttgctcggagttga 34427660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 378 - 474
Target Start/End: Complemental strand, 18271682 - 18271586
Alignment:
Q  378 tcataccacaaaatgaggatcaacaactcccttctgaatgtggatagcacccaaggcagcatctcccaaaactactccccctgttgctcgaagttga 474  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||| || |  | |||||| |||||||| ||| | ||| || |||| ||||||    
T  18271682 tcataccacaaaatgaggatcaacaactcccttttggatgtggatagcgcctagtgtagcatcacccaaaaccacttctccttttactcggagttga 18271586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 43442310 - 43442236
Alignment:
Q  157 aagaagctaaattagcccatcaaaattaaca-catagagaatcgaactggagaccttgagaaagagcacactccc 230  Q
    ||||| ||||||||||||||| ||||| ||| || ||||||||||||  ||||||||||| | ||||||||||||    
T  43442310 aagaaactaaattagcccatccaaattgacaacagagagaatcgaacctgagaccttgaggaggagcacactccc 43442236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 32670590 - 32670631
Alignment:
Q  157 aagaagctaaattagcccatcaaaattaacacatagagaatc 198  Q
    ||||||||||||||||||||| ||||| |||||| |||||||    
T  32670590 aagaagctaaattagcccatccaaattgacacatggagaatc 32670631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 5e-30; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 381 - 504
Target Start/End: Original strand, 2067572 - 2067695
Alignment:
Q  381 taccacaaaatgaggatcaacaactcccttctgaatgtggatagcacccaaggcagcatctcccaaaactactccccctgttgctcgaagttgagatgct 480  Q
    |||||||||||| |||||||| ||||| |||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||| ||||||   |||    
T  2067572 taccacaaaatgtggatcaaccactcctttctgaatgtggattgcacccaatgtagcatctcccaaaactactccccctgttgctcggagttgaacagct 2067671  T
Q  481 gagtcacgcacctaaaatttaaaa 504  Q
    || || |||||||| |||| ||||    
T  2067672 gaatcgcgcacctataattcaaaa 2067695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 6122908 - 6122834
Alignment:
Q  157 aagaagctaaattagcccatcaaaattaacac-atagagaatcgaactggagaccttgagaaagagcacactccc 230  Q
    ||||||||||||||||||| | ||||| |||| | || |||||||||  ||||||||||| | ||||||||||||    
T  6122908 aagaagctaaattagcccacccaaattgacactagagggaatcgaacctgagaccttgaggaggagcacactccc 6122834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 157 - 230
Target Start/End: Original strand, 31794226 - 31794300
Alignment:
Q  157 aagaagctaaattagcccatcaaaattaacac-atagagaatcgaactggagaccttgagaaagagcacactccc 230  Q
    ||||||||||||||||||| | ||||| |||| | || ||||||||||  |||||||||| | ||||||||||||    
T  31794226 aagaagctaaattagcccacccaaattgacaccagagggaatcgaactctagaccttgaggaggagcacactccc 31794300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 44961879 - 44961807
Alignment:
Q  157 aagaagctaaattagcccatcaaaattaacac-atagagaatcgaactggagaccttgagaaagagcacactc 228  Q
    ||||||||||||||||||| | ||||| |||| | ||||||||||||  |||||| |||| | ||||||||||    
T  44961879 aagaagctaaattagcccacccaaattgacactagagagaatcgaacctgagaccctgaggaggagcacactc 44961807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 381 - 453
Target Start/End: Original strand, 45161200 - 45161272
Alignment:
Q  381 taccacaaaatgaggatcaacaactcccttctgaatgtggatagcacccaaggcagcatctcccaaaactact 453  Q
    |||||||||||| ||||||||||||||||||||||| || ||||||||||| | ||||||| |||||||||||    
T  45161200 taccacaaaatgtggatcaacaactcccttctgaatatgaatagcacccaatgtagcatcttccaaaactact 45161272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 41519227 - 41519299
Alignment:
Q  157 aagaagctaaattagcccatcaaaattaacacatagagaatcgaactggagaccttgagaaagagcacactcc 229  Q
    ||||||||||||||||||| | ||||| ||||| |||||| |||||  ||||||||||| | |||||||||||    
T  41519227 aagaagctaaattagcccacctaaattgacacagagagaagcgaacctgagaccttgaggaggagcacactcc 41519299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 7309469 - 7309396
Alignment:
Q  157 aagaagctaaattagcccatcaaaattaacacatagagaatcgaactggagaccttgagaaagagcacactccc 230  Q
    |||||||||||||||||||   ||||| ||||  ||||||||||||| ||||||| ||| | ||||||||||||    
T  7309469 aagaagctaaattagcccacttaaattgacacggagagaatcgaacttgagacctcgaggaggagcacactccc 7309396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 44628146 - 44628218
Alignment:
Q  157 aagaagctaaattagcccatcaaaattaacacatagagaatcgaactggagaccttgagaaagagcacactcc 229  Q
    ||||||||||||||||||| ||||||| ||||  || ||||| |||| ||||| ||||| | |||||||||||    
T  44628146 aagaagctaaattagcccaccaaaattgacaccgagggaatcaaacttgagactttgaggaggagcacactcc 44628218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 157 - 230
Target Start/End: Original strand, 24438209 - 24438283
Alignment:
Q  157 aagaagctaaattagcccatcaaaattaaca-catagagaatcgaactggagaccttgagaaagagcacactccc 230  Q
    ||||||||||||||||||||  ||||| ||| || |||||||||||   || ||||| |||||||||||||||||    
T  24438209 aagaagctaaattagcccattcaaattgacaccagagagaatcgaatctgaaaccttaagaaagagcacactccc 24438283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 25132341 - 25132413
Alignment:
Q  157 aagaagctaaattagcccatcaaaattaacacatagagaatcgaactggagaccttgagaaagagcacactcc 229  Q
    ||||||||||||||||||| | |||||| ||    |||||||||||  |||||||| |||| |||||||||||    
T  25132341 aagaagctaaattagcccacccaaattagcattgggagaatcgaacctgagaccttaagaaggagcacactcc 25132413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 230
Target Start/End: Original strand, 8030166 - 8030240
Alignment:
Q  157 aagaagctaaattagcccatcaaaattaacac-atagagaatcgaactggagaccttgagaaagagcacactccc 230  Q
    ||||||||||||||||||| | ||||| |||| | || |||||||||| ||||||||||| | ||||||||||||    
T  8030166 aagaagctaaattagcccacccaaattgacactagagggaatcgaacttgagaccttgaggaggagcacactccc 8030240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 7949416 - 7949489
Alignment:
Q  157 aagaagctaaattagcccatcaaaattaacac-atagagaatcgaactggagaccttgagaaagagcacactcc 229  Q
    ||||||||||||||||||| | ||||| |||| | ||||||||||||  ||||||||||| | |||||||||||    
T  7949416 aagaagctaaattagcccacctaaattgacaccagagagaatcgaacctgagaccttgaggaggagcacactcc 7949489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 31826723 - 31826651
Alignment:
Q  157 aagaagctaaattagcccatcaaaattaacac-atagagaatcgaactggagaccttgagaaagagcacactc 228  Q
    |||||| |||||||||||| | ||||| |||| | || |||||||||| ||||||||||| | ||||||||||    
T  31826723 aagaaggtaaattagcccacccaaattgacactaaagggaatcgaacttgagaccttgaggaggagcacactc 31826651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 230
Target Start/End: Original strand, 21195638 - 21195712
Alignment:
Q  157 aagaagctaaattagcccatcaaaattaacac-atagagaatcgaactggagaccttgagaaagagcacactccc 230  Q
    ||||||||||||||||||||| ||||| |||| | || |||||||||  ||||||||||| | ||||||||||||    
T  21195638 aagaagctaaattagcccatccaaattgacactagagggaatcgaacctgagaccttgaggaggagcacactccc 21195712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 40791453 - 40791524
Alignment:
Q  157 aagaagctaaattagcccatcaaaattaacacatagagaatcgaactggagaccttgagaaagagcacactc 228  Q
    ||||||||||||||| ||||| ||||| |  |   |||||||||||| ||||||||||||| ||||||||||    
T  40791453 aagaagctaaattagtccatccaaattcaatcggggagaatcgaacttgagaccttgagaaggagcacactc 40791524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 1435177 - 1435105
Alignment:
Q  157 aagaagctaaattagcccatcaaaattaaca-catagagaatcgaactggagaccttgagaaagagcacactcc 229  Q
    ||||||||||||||||||| | ||||| ||| || ||||||||||||| ||||||||||| |  ||||||||||    
T  1435177 aagaagctaaattagcccacccaaattgacaccagagagaatcgaact-gagaccttgaggagaagcacactcc 1435105  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 38551876 - 38551808
Alignment:
Q  163 ctaaattagcccatcaaaattaaca-catagagaatcgaactggagaccttgagaaagagcacactccc 230  Q
    ||||||||||| ||| ||||||||| |  ||||||||||||   ||||||| |||||||||||||||||    
T  38551876 ctaaattagccaatctaaattaacatcggagagaatcgaacacaagaccttaagaaagagcacactccc 38551808  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 33727835 - 33727906
Alignment:
Q  157 aagaagctaaattagcccatcaaaattaacac-atagagaatcgaactggagaccttgagaaagagcacact 227  Q
    ||||||||||||||||||||| ||||| |||| | || |||||||||  ||||||||||| | |||||||||    
T  33727835 aagaagctaaattagcccatccaaattgacactagagggaatcgaacctgagaccttgaggaggagcacact 33727906  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 11819890 - 11819816
Alignment:
Q  157 aagaagctaaattagcccatcaaaattaacac-atagagaatcgaactggagaccttgagaaagagcacactccc 230  Q
    ||||||||||||||||||| | ||||| |||| | || |||||||||  ||||||||||| | ||||||||||||    
T  11819890 aagaagctaaattagcccacccaaattgacactagagtgaatcgaacctgagaccttgaggaggagcacactccc 11819816  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 27750844 - 27750770
Alignment:
Q  157 aagaagctaaattagcccatcaaaattaacac-atagagaatcgaactggagaccttgagaaagagcacactccc 230  Q
    ||||||||||||||| ||||| ||||| |||| | || |||||||||  ||||||||||| | ||||||||||||    
T  27750844 aagaagctaaattagtccatccaaattgacactagagggaatcgaacctgagaccttgaggaggagcacactccc 27750770  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 158 - 229
Target Start/End: Complemental strand, 28841527 - 28841455
Alignment:
Q  158 agaagctaaattagcccatcaaaattaacacat-agagaatcgaactggagaccttgagaaagagcacactcc 229  Q
    |||| ||||||||||| ||| ||||| ||||   ||||||||||||| ||||||||||| | |||||||||||    
T  28841527 agaaactaaattagccaatctaaattgacaccggagagaatcgaacttgagaccttgaggaggagcacactcc 28841455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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