View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14706_low_10 (Length: 352)
Name: NF14706_low_10
Description: NF14706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14706_low_10 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 45 - 352
Target Start/End: Complemental strand, 1042343 - 1042036
Alignment:
| Q |
45 |
tatctccaatgtggcagctataaaaatatttcttgctaacagtttgcacatgagcacatgacttctttcataatcattccttagttaaacatagttacac |
144 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1042343 |
tatctccaatgtggcagctataaaaatatttcttgctaacagtttgcacatgagcacatgacttctttcataatcattccttagttaaacatagttagac |
1042244 |
T |
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| Q |
145 |
agcagccacttgtggtcaatttttcaacctttggtaaatacgtgtgatggctaaccaaccctactttttattgtacaacctgttcaaccaaatacgacaa |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1042243 |
agcagccacttgtggtcaatttttcaacctttggtaaatacgtgtgatggctaaccaaccctactttttattgtacaacctgttcaaccaaatacgacaa |
1042144 |
T |
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| Q |
245 |
gataaaattatccatgtaacaaaacaacaactataacaactatataacatttttgacctttgaaaccagtcttaggaaaagtggtcaaatcccacttgac |
344 |
Q |
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| T |
1042143 |
gataaaattatccatgtaacaaaacaacaactataacaactatataacatttttgacctttgaaaccagtcttaggaaaagtggtcaaatcccacttgac |
1042044 |
T |
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| Q |
345 |
tttatcat |
352 |
Q |
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|||||||| |
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| T |
1042043 |
tttatcat |
1042036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 53 - 350
Target Start/End: Original strand, 1043234 - 1043529
Alignment:
| Q |
53 |
atgtggcagctataaaaatatttcttgctaacagtttgcacatgagcacatgacttctttcataat-cattccttagttaaacatagttacacagcagcc |
151 |
Q |
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|||||||||||||||||||||| |||| |||| |||||||||| ||||||| |||||||||||||| |||||| |||||||||| || | || |||||| |
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| T |
1043234 |
atgtggcagctataaaaatattccttg-taactgtttgcacataagcacatcacttctttcataattcattccctagttaaacacagctgcaatgcagcc |
1043332 |
T |
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| Q |
152 |
acttgtggtcaatttttcaacctttggtaaatacgtgtgatggctaaccaaccctactttttat-tgtacaacctgttcaaccaaatacgacaagataaa |
250 |
Q |
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|||| |||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1043333 |
acttatggtcaatttttcaacttttggtaaatacgtgtgatggctgaccaaacctactttttatccatacaacctgttcaaccaaatacgacaagataaa |
1043432 |
T |
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| Q |
251 |
attatccatgtaacaaaacaacaactataacaactatataacatttttgacctttgaaaccagtcttaggaaaagtggtcaaatcccacttgactttatc |
350 |
Q |
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| T |
1043433 |
attatccatgtaac-aaacaaaaactataacaactatataaca--attaacctttgaaactagtcttaataaaagtggtcaaatcccacttgactttatc |
1043529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 277 - 350
Target Start/End: Original strand, 1045471 - 1045544
Alignment:
| Q |
277 |
ataacaactatataacatttttgacctttgaaaccagtcttaggaaaagtggtcaaatcccacttgactttatc |
350 |
Q |
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|||| |||||||||||| |||||||||||||||| ||||||| |||||||||| ||||| |||||||||||||| |
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| T |
1045471 |
ataataactatataacaattttgacctttgaaactagtcttaagaaaagtggtgaaatcacacttgactttatc |
1045544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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