View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14706_low_13 (Length: 347)
Name: NF14706_low_13
Description: NF14706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14706_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 16 - 339
Target Start/End: Complemental strand, 36455694 - 36455371
Alignment:
| Q |
16 |
gttttatctaaacaatcttctagcccaagtccttcaaactcatccaaccacacaccatagttatttggccacatagatagagggttaggatcaacacaac |
115 |
Q |
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| T |
36455694 |
gttttatctaaacaatcttctagcccaagtccttcaaactcatccaaccacacaccatagttatttggccacatagatagagggttaggatcaacacaac |
36455595 |
T |
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| Q |
116 |
aaactttgattccataaagggaaacttgttccgcaaggcgaatgcctgcagggccagcaccgactatgaccacgtcgaattgagaacgatcagaagggtg |
215 |
Q |
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| T |
36455594 |
aaaccttgattccataaagggaaacttgttccgcaaggcgaattcctgcagggccagcaccgactatgatcacgtcgaattgagaacgatcagaagggtg |
36455495 |
T |
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| Q |
216 |
gtgccatggaagatcgaaatctaaggcttcgggttgatactcgggttttaagtcaaggaaatttccaaactttttggtactgttgatcatggtattagtt |
315 |
Q |
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| T |
36455494 |
gtgccatggaagatcgaaatctaaggcttcgggttgatactcggattttaagtcaaggaaatttccaaactttttggtactgttgatcatggtattagtt |
36455395 |
T |
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| Q |
316 |
tttcttgaagaaggaagtgatatt |
339 |
Q |
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| T |
36455394 |
tttcttgaagaaggaagtgatatt |
36455371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 16 - 293
Target Start/End: Original strand, 36462871 - 36463148
Alignment:
| Q |
16 |
gttttatctaaacaatcttctagcccaagtccttcaaactcatccaaccacacaccatagttatttggccacatagatagagggttaggatcaacacaac |
115 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||| |
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| T |
36462871 |
gttttatctaaacaatcttctagcccaagaccttcaaactcatcaaaccaaacaccatagttattaggccagatagacagagggttaggatcaacacaac |
36462970 |
T |
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| Q |
116 |
aaactttgattccataaagggaaacttgttccgcaaggcgaatgcctgcagggccagcaccgactatgaccacgtcgaattgagaacgatcagaagggtg |
215 |
Q |
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|||| || ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| ||||| ||| | ||| || ||||||||||||| |
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| T |
36462971 |
aaaccttcattccataaagggaaacttgttctgcaaggcgaattcctgcggggccagcaccgattatgatcacattgaaacaagtgtgatcagaagggtg |
36463070 |
T |
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| Q |
216 |
gtgccatggaagatcgaaatctaaggcttcgggttgatactcgggttttaagtcaaggaaatttccaaactttttggt |
293 |
Q |
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| T |
36463071 |
aaacaatggaaggtcgaaatccaaggcttcgggttgatactcggattttaagtcaagaaaatttccaaactttctggt |
36463148 |
T |
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