View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14706_low_15 (Length: 338)
Name: NF14706_low_15
Description: NF14706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14706_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 13 - 320
Target Start/End: Complemental strand, 5643101 - 5642794
Alignment:
| Q |
13 |
aatatcaagtgaatctgggtccaatgcctgtgcaactgataataatgtggctgaagaaggattgtctaaaattaaagaatctgatagagagtggacttta |
112 |
Q |
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| T |
5643101 |
aatatcaagtgaatctgggtccaatgcatgtgcaactgataataatgtggctgaagaaggattgtctaaaattaaagaatctgatagagagtggacttta |
5643002 |
T |
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| Q |
113 |
ttagatttgtattctgggtgtggagctatgtccactggcctttgttttggagcttctattggtgacattaagcttgtgacggtatttaggctattttgcg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5643001 |
ttagatttgtattctgggtgtggagctatgtccactggcctttgttttggagcttctattgctgacattaagcttgtgacggtatttaggctattttgca |
5642902 |
T |
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| Q |
213 |
taatgtttctttggttcattgtaacattgcttgtaaggannnnnnnactgattttataatgttgtttttgactttgaagaggtgggctgtggatacaaat |
312 |
Q |
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| T |
5642901 |
taatgtttctttggttcattgtaacattgcttgtaaggatttttttactgattttataatgttgtttttgactttgaagaggtgggctgtggatacaaat |
5642802 |
T |
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| Q |
313 |
gaatatgc |
320 |
Q |
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|||||||| |
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| T |
5642801 |
gaatatgc |
5642794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 101 - 314
Target Start/End: Complemental strand, 1340964 - 1340751
Alignment:
| Q |
101 |
gagtggactttattagatttgtattctgggtgtggagctatgtccactggcctttgttttggagcttctattggtgacattaagcttgtgacggtattta |
200 |
Q |
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| T |
1340964 |
gagtggactttactggatttgtattctgggtgtggagctatgtccactggcctttgctttggagcatctatttctggcattaagcttgtcacggtattta |
1340865 |
T |
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| Q |
201 |
ggctattttgcgtaatgtttctttggttcattgtaacattgcttgta-aggannnnnnnactgattttataatgttgtttttgactttgaagaggtgggc |
299 |
Q |
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| T |
1340864 |
gactaatttgcataatgtttctttggttcattttaactttgcttgtacagaatatctttactaattttataatgttgtttttgac-ttcaagagatgggc |
1340766 |
T |
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| Q |
300 |
tgtggatacaaatga |
314 |
Q |
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||||||| |||||| |
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| T |
1340765 |
cgtggatataaatga |
1340751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 9393224 - 9392990
Alignment:
| Q |
17 |
tcaagtgaatctgggtccaatgcctgtgcaactgataataatgtggctgaagaaggattgtctaaaattaaagaatctgataga---gagtggactttat |
113 |
Q |
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|||||||||||||||||||||| | ||||||||||||| || | || | ||||| | | |||||||||||||| |||| |||||||||||| |
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| T |
9393224 |
tcaagtgaatctgggtccaatgtccgtgcaactgataaaaaaggggttaaagaaaagtcaacacaaattaaagaatctaataggcctgagtggactttac |
9393125 |
T |
|
| Q |
114 |
tagatttgtattctgggtgtggagctatgtccactggcctttgttttggagcttctattggtgacattaagcttgtgacggtatttaggctattttgcgt |
213 |
Q |
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| T |
9393124 |
tggatttgtattctgggtgtggagctatgtccactggcctttgctttggagcgtctatttctggcattaagcttgtcacggtatttagactaatttgcat |
9393025 |
T |
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| Q |
214 |
aatgtttctttggttcattgtaacattgcttgtaa |
248 |
Q |
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||||||||||||||||||| |||| ||||| |||| |
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| T |
9393024 |
aatgtttctttggttcattttaactttgctggtaa |
9392990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 17 - 321
Target Start/End: Complemental strand, 31942854 - 31942543
Alignment:
| Q |
17 |
tcaagtgaatctgggtccaatgcctgtgcaactgataataatgtggctgaagaaggattgtctaaaattaaagaatctgataga---gagtggactttat |
113 |
Q |
| |
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|||||||||||||||||||||| | |||||||||||| || | || | ||||| || || |||||||||||||| |||| |||||||||||| |
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| T |
31942854 |
tcaagtgaatctgggtccaatgtccatgcaactgataagaaaggggttaaagaaaaatcaactcaaattaaagaatctaataggcgcgagtggactttac |
31942755 |
T |
|
| Q |
114 |
tagatttgtattctgggtgtggagctatgtccactggcctttgttttggagcttctattggtgacattaagcttgtgacggtatttaggctattttgcgt |
213 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| || |||||||||||| ||||||||||| ||| ||||| | |
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| T |
31942754 |
tggatttgtattctgggtgtggagctatgtccactggcctttgctttggagcgtctatttctggcattaagcttgtcacggtatttagactaatttgcat |
31942655 |
T |
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| Q |
214 |
aatgtttctttggttcattgtaacattgcttgta-aggannnnnnnactgattttataat----gttgtttttgactttgaagaggtgggctgtggatac |
308 |
Q |
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| T |
31942654 |
aatgtttctaaggttcattttaactttgctggtagataatatttttactgattttataatcttggttgtttttgac-ttgaagagatgggctgtggatat |
31942556 |
T |
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| Q |
309 |
aaatgaatatgct |
321 |
Q |
| |
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|||| || ||||| |
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| T |
31942555 |
aaataaacatgct |
31942543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 167
Target Start/End: Complemental strand, 13539620 - 13539554
Alignment:
| Q |
101 |
gagtggactttattagatttgtattctgggtgtggagctatgtccactggcctttgttttggagctt |
167 |
Q |
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| T |
13539620 |
gagtggagtttattggatttgtatgccggttgtggagctatgtccacgggacttttctttggagctt |
13539554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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