View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14706_low_16 (Length: 335)
Name: NF14706_low_16
Description: NF14706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14706_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 6 - 332
Target Start/End: Complemental strand, 30488349 - 30488022
Alignment:
| Q |
6 |
aacacttacatcaaaggtcctgaatgcatgataaaaaatagccaaaagacaagttcgataaaaaccaattcccaaatacaaaagaggattgagccaccac |
105 |
Q |
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| T |
30488349 |
aacacttacatcaaaggtcctgaatgtatgataaaaaatagccaaaagataagttcgataaaaaccaattcccaaatacaaaagaggattgagccaccac |
30488250 |
T |
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| Q |
106 |
atatgaaagttgaatgaaaaattaacatgattcgccttcaatctcaaaaaagattggagcttatt-ttttctagaagacaatgaatagagtttccctttt |
204 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30488249 |
atatgaaagttgaaagcaaaattaacatgattcgccttcaatctcaaaaaagattggagcttatttttttctagaagacaatgaatagagtttccctttt |
30488150 |
T |
|
| Q |
205 |
gccgaaacatgtgagtatttctttctcaccaaaagactcaatcatatgacatccaaataagatgaagaaccgagcgaagatttttggagaaaccacccaa |
304 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
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| T |
30488149 |
gccgaaaaatgtgagtatttctttctcaccaaaagactcaatcatatgacatccaaataagatgaagaatcgagcgaagatttttggagaaaccacctaa |
30488050 |
T |
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| Q |
305 |
cgatctgaattgaagtaaatgatccgat |
332 |
Q |
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| T |
30488049 |
cgatctgaattgaagtaaatgatccgat |
30488022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 328
Target Start/End: Original strand, 17077173 - 17077276
Alignment:
| Q |
225 |
ctttctcaccaaaagactcaatcatatgacatccaaataagatgaagaaccgagcgaagatttttggagaaaccacccaacgatctgaattgaagtaaat |
324 |
Q |
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| T |
17077173 |
ctttctcaccaaatgacacaaacaaatgacaaccaaatcagataaagaaccgagcaaataattttagaaaaaccattcaaagatccgaattgaattaaat |
17077272 |
T |
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| Q |
325 |
gatc |
328 |
Q |
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|||| |
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| T |
17077273 |
gatc |
17077276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 168
Target Start/End: Original strand, 6561126 - 6561209
Alignment:
| Q |
85 |
aaaagaggattgagccaccacatatgaaagttgaatgaaaaattaacatgattcgccttcaatctcaaaaaagattggagctta |
168 |
Q |
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||||||||||| ||||||||||||||| | || || |||||||||| |||||| |||||||| | | | || |||||||||||| |
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| T |
6561126 |
aaaagaggattaagccaccacatatgataattaaaagaaaaattaaaatgatttgccttcaaccaccagaaggattggagctta |
6561209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 320
Target Start/End: Complemental strand, 23636508 - 23636438
Alignment:
| Q |
250 |
atgacatccaaataagatgaagaaccgagcgaagatttttggagaaaccacccaacgatctgaattgaagt |
320 |
Q |
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| T |
23636508 |
atgacatccaaaccagatgaagaacgaagtgaatattttttgaaaaacctcccaaagatctgaattgaagt |
23636438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 15259045 - 15259113
Alignment:
| Q |
78 |
caaatacaaaagaggattgagccaccacatatgaaagttgaatgaaaaattaacatgattcgccttcaa |
146 |
Q |
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|||| |||| ||||| || ||||||||||||||| ||||||| | |||||||| |||||| || ||||| |
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| T |
15259045 |
caaacacaatagagggttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaa |
15259113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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