View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14706_low_22 (Length: 281)
Name: NF14706_low_22
Description: NF14706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14706_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 53127917 - 53127655
Alignment:
| Q |
18 |
cacccatcactcatctattaacagtagtcttttttcttattacaactcattatcttttataggaaacaagatatcgttcacgccatttggatttgatgtt |
117 |
Q |
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| T |
53127917 |
cacccatcactcatctattaacagtagtcttttttcttattacaactcattatcttttataggaaacaagatatcgttcacgccatttggatttgatgtt |
53127818 |
T |
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| Q |
118 |
gcatccagaagttcgagaaatattcaaaactagatgtaaaatcgttaaatacattcggaagtaccttgatgaccgtgatttcttggaggtttgttctctg |
217 |
Q |
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| T |
53127817 |
gcatcctgaagttcgagaaatattcaaaactagatgtaaaatcgttaaatacattcggaaataccttgatgaccgtgatttcttggaggtttgttctctg |
53127718 |
T |
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| Q |
218 |
tccaagtattttgacaccatctgcttataatttctttccttccatttaccttttcttttcact |
280 |
Q |
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| T |
53127717 |
tccaagtattctgacaccatctgcttataatttctttccttccatttaccttttcttttcact |
53127655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 53110073 - 53109813
Alignment:
| Q |
18 |
cacccatcactcatctattaacagtagtcttttttcttattacaac-tcattatcttttataggaaacaagatatcgttcacgccatttggatttgatgt |
116 |
Q |
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| T |
53110073 |
cacccatcgctcatctattaacagtagtcttttctcttattgcaacgtaattatcttt-ataggaaacaagatatcgtttacgctttttggatttgatat |
53109975 |
T |
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| Q |
117 |
tgcatccagaagttcgagaaatattcaaaactagatgtaaaatcgttaaatacattcggaagtaccttgatgaccgtgatttcttggaggtttgttctct |
216 |
Q |
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| T |
53109974 |
tgaattcagaaattcgagaaatattcaaaactagaagtaatatcatttcttacatccgaagattccttgatggccttgatttcatggaggtttgt--tct |
53109877 |
T |
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| Q |
217 |
gtccaagtattttgacaccatctgcttataatttctttccttccatttaccttttcttttcact |
280 |
Q |
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| T |
53109876 |
gtccaaatattctgatgccagttgcttataatatcttccattccctttacctactcttttcact |
53109813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 31 - 277
Target Start/End: Complemental strand, 53115485 - 53115238
Alignment:
| Q |
31 |
tctattaacagtagtcttttttcttattacaac-tcattatcttttataggaaacaagatatcgttcacgccatttggatttgatgttgcatccagaagt |
129 |
Q |
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| T |
53115485 |
tctattaatagtggtctcttttcttattgcaacgtaattgtcttgtataggaaacaagacatcgtttacgccccttggatttgatattgaattcagatat |
53115386 |
T |
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| Q |
130 |
tcgagaaatattcaaaactagatgtaaaatcgttaaatacattcggaagtaccttgatgaccgtgatttcttggaggtttgttctctgtccaagtatttt |
229 |
Q |
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| T |
53115385 |
tcgagaaatattccacactagaaatagaatcatttcttacatccagaggcaccttgatgaccttgattttatggaggtttgttctctgtccaagtattct |
53115286 |
T |
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| Q |
230 |
gacaccatctgcttataatttctttccttccatttaccttttcttttc |
277 |
Q |
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|| ||| |||||||| | |||| | | || ||||||| |||||||| |
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| T |
53115285 |
gatgccagttgcttatactatcttccatcccctttacctattcttttc |
53115238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 124
Target Start/End: Complemental strand, 53127954 - 53127921
Alignment:
| Q |
91 |
tcgttcacgccatttggatttgatgttgcatcca |
124 |
Q |
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| T |
53127954 |
tcgttcatgccatttggatttgatgttgcatcca |
53127921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 160
Target Start/End: Original strand, 15839134 - 15839220
Alignment:
| Q |
74 |
ttataggaaacaagatatcgttcacgccatttggatttgatgttgcatccagaagttcgagaaatattcaaaactagatgtaaaatc |
160 |
Q |
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||||||||||| |||||||| | ||||||||||||||||||| | || |||| |||||||||||||||| ||||| | ||||||| |
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| T |
15839134 |
ttataggaaactagatatcggttacgccatttggatttgatgcttaatacagaggttcgagaaatattcaggactaggtctaaaatc |
15839220 |
T |
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