View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14706_low_23 (Length: 281)
Name: NF14706_low_23
Description: NF14706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14706_low_23 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 5 - 281
Target Start/End: Complemental strand, 51528727 - 51528451
Alignment:
| Q |
5 |
cacaattaatccctcaagtcggataaaagtgggaattagattaaatttaaattgatgtatttatgatatatacctaggtaagcatgaacggcctgcatat |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51528727 |
cacaattaatccctcaagtcggataaaagtgggaattagattaaatttaaattgatgtatttatgatatatacctaggtaagcatgaacggcctgcatat |
51528628 |
T |
|
| Q |
105 |
aagtgtagtttctcttgccattaactgagtctggatatctataacaatcagctataagattgtaagtgtaaatggaaatggatgaaaatgtgatcataac |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51528627 |
aagtgtagtttctcttgccattaactgagtctggatatctataacaatcagctataagattgtaagtgtaaatggaaatggatgaaaatgtgatcataac |
51528528 |
T |
|
| Q |
205 |
aagtatgccagctatccatcctagttgagaaattgcccatgctagagccaacactcctgcacccaccaccactgtta |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51528527 |
aagtatgccagctatccatcctagttgagaaattgcccatgctagagccaacactcctgcacccaccaccactgtta |
51528451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 98 - 281
Target Start/End: Complemental strand, 241605 - 241422
Alignment:
| Q |
98 |
tgcatataagtgtagtttctcttgccattaactgagtctggatatctataacaatcagctataagattgtaagtgtaaatggaaatggatgaaaatgtga |
197 |
Q |
| |
|
||||| ||||| || |||||||||||| |||||| ||||||||| ||||| |||||||||| |||| |||||||| || || ||| ||| ||| | | |
|
|
| T |
241605 |
tgcatgtaagtataatttctcttgccagtaactgggtctggatacctatagcaatcagctacaagactgtaagtgaaagcagagatgcatgcaaagatta |
241506 |
T |
|
| Q |
198 |
tcataacaagtatgccagctatccatcctagttgagaaattgcccatgctagagccaacactcctgcacccaccaccactgtta |
281 |
Q |
| |
|
| ||| ||| |||||||||||||||||||||| || |||||||||||||||||||| ||||| || || |||||||||| |
|
|
| T |
241505 |
ttatactggctataccagctatccatcctagttgagccatggcccatgctagagccaacacccctgccccaactaccactgtta |
241422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 281
Target Start/End: Original strand, 223591 - 223739
Alignment:
| Q |
133 |
gtctggatatctataacaatcagctataagattgtaagtgtaaatggaaatggatgaaaatgtgatcataacaagtatgccagctatccatcctagttga |
232 |
Q |
| |
|
||||||| | ||||| |||||||||| |||| |||||||| |||| || ||||||| ||| || | ||| ||| ||||||||||||||||||||| |
|
|
| T |
223591 |
gtctggaaacctatagcaatcagctacaagactgtaagtgaaaatagagatggatgcaaaggttagtatactggctataccagctatccatcctagttga |
223690 |
T |
|
| Q |
233 |
gaaattgcccatgctagagccaacactcctgcacccaccaccactgtta |
281 |
Q |
| |
|
| || |||||||||||||||||||| ||||| || || |||||||||| |
|
|
| T |
223691 |
gccatagcccatgctagagccaacacccctgccccaactaccactgtta |
223739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 12031372 - 12031446
Alignment:
| Q |
98 |
tgcatataagtgtagtttctcttgccattaactgagtctggatatctataacaatcagctataagattgtaagtg |
172 |
Q |
| |
|
|||||||||| || ||||||||||||||||||| |||||||| ||||| |||||||| | |||| |||||||| |
|
|
| T |
12031372 |
tgcatataagaataatttctcttgccattaactggatctggatacctatagcaatcagccacaagactgtaagtg |
12031446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University