View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14706_low_28 (Length: 246)
Name: NF14706_low_28
Description: NF14706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14706_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 32484239 - 32484466
Alignment:
| Q |
1 |
tgtattcggctccgattaatgccttcatgacggctagtggtacgcaattcttccctcgcccaagatcttgaaaacaaaattgagaggaaagaggagttat |
100 |
Q |
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| T |
32484239 |
tgtattcggctccgattaatgccttcatgacggctagtggtacgcaattcttccctcgcccaagatcttgaaaacaaaattgagaagaaagaggagttat |
32484338 |
T |
|
| Q |
101 |
tatggggatcatggcgtatatattatcccacatatatacttctcttttaccaaaatttgtgtttcaatcatttgaccatgacattgttgttgtggccaag |
200 |
Q |
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| T |
32484339 |
tatggggatcatggcgtatatattatcccacatatatacttctcttttaccaaaatttgtgtttcaatcatttgaccatgacattgttgttgtggccaag |
32484438 |
T |
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| Q |
201 |
tagtagaggtaaatttgacacacatatt |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
32484439 |
tagtagaggtaaatttgacacacatatt |
32484466 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 8103036 - 8103092
Alignment:
| Q |
16 |
ttaatgccttcatgacggctagtggtacgcaattcttccctcgcccaagatcttgaa |
72 |
Q |
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| T |
8103036 |
ttaataccttcatgccttctagtggtacgcaattcttcccccacccaagatcttgaa |
8103092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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