View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14706_low_29 (Length: 244)

Name: NF14706_low_29
Description: NF14706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14706_low_29
NF14706_low_29
[»] chr3 (5 HSPs)
chr3 (27-244)||(31274307-31274524)
chr3 (41-118)||(41767763-41767840)
chr3 (45-119)||(17439964-17440038)
chr3 (45-107)||(28206536-28206598)
chr3 (53-118)||(25750349-25750414)
[»] chr7 (2 HSPs)
chr7 (29-116)||(37449493-37449580)
chr7 (27-119)||(29658253-29658345)
[»] chr4 (9 HSPs)
chr4 (45-119)||(49280668-49280742)
chr4 (45-120)||(12820404-12820479)
chr4 (29-119)||(35451104-35451194)
chr4 (45-106)||(53685121-53685182)
chr4 (45-116)||(40082222-40082293)
chr4 (36-119)||(44975930-44976013)
chr4 (29-119)||(6365346-6365436)
chr4 (45-119)||(32885710-32885784)
chr4 (30-118)||(31601829-31601917)
[»] chr1 (2 HSPs)
chr1 (29-119)||(9527448-9527538)
chr1 (45-119)||(11405478-11405552)
[»] chr8 (6 HSPs)
chr8 (27-119)||(33570410-33570502)
chr8 (30-119)||(6064399-6064488)
chr8 (45-106)||(10557468-10557529)
chr8 (30-119)||(13762496-13762585)
chr8 (29-118)||(14683900-14683988)
chr8 (45-117)||(13702351-13702423)
[»] chr5 (3 HSPs)
chr5 (27-119)||(14487583-14487675)
chr5 (45-119)||(9408949-9409023)
chr5 (53-119)||(37303956-37304022)
[»] chr6 (1 HSPs)
chr6 (29-107)||(16251506-16251584)
[»] chr2 (1 HSPs)
chr2 (45-119)||(11133098-11133172)


Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 27 - 244
Target Start/End: Original strand, 31274307 - 31274524
Alignment:
Q  27 aagtagtctaatgactataattcatcttttaaggtgaataggtgagatgtccaaggttcaaacaacgacccctgcatataacaatacattgtctttgagt 126  Q
    ||||||||||||||||||||||||||||||||||||||||  || ||||| ||||||||||||  |||||||||||||||||||||||||||||||||||    
T  31274307 aagtagtctaatgactataattcatcttttaaggtgaataaatgggatgtacaaggttcaaacctcgacccctgcatataacaatacattgtctttgagt 31274406  T
Q  127 tatgctcacggggacaaaatttgtttaattaattagcaagtctttgtaacccagctcttcaaattgtgtgctttagaggagttgaaatcatctttatttc 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31274407 tatgctcacggggacaaaatttgtttaattaattagcaagtctttgtaacccagctcttcaaattgtgtgctttagaggagttgaaatcatctttatttc 31274506  T
Q  227 tcaaaagatatcaaagct 244  Q
    ||||||||||||||||||    
T  31274507 tcaaaagatatcaaagct 31274524  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 118
Target Start/End: Original strand, 41767763 - 41767840
Alignment:
Q  41 ctataattcatcttttaaggtgaataggtgagatgtccaaggttcaaacaacgacccctgcatataacaatacattgt 118  Q
    |||||||||| ||| ||||||||||| ||| | || || || ||| ||||| ||||||||||||||||||| ||||||    
T  41767763 ctataattcaccttataaggtgaataagtggggtgcccgagattcgaacaatgacccctgcatataacaatgcattgt 41767840  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 119
Target Start/End: Original strand, 17439964 - 17440038
Alignment:
Q  45 aattcatcttttaaggtgaataggtgagatgtccaaggttcaaacaacgacccctgcatataacaatacattgtc 119  Q
    |||||| ||| ||||||||||| ||| | | ||| ||||||||||| || ||||||||||||| ||| |||||||    
T  17439964 aattcaccttataaggtgaataagtggggtatccgaggttcaaacaccggcccctgcatataataatgcattgtc 17440038  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 28206536 - 28206598
Alignment:
Q  45 aattcatcttttaaggtgaataggtgagatgtccaaggttcaaacaacgacccctgcatataa 107  Q
    |||||| ||| ||||||||||| ||| |||||||| |||||||||  |||||| |||||||||    
T  28206536 aattcaccttataaggtgaataagtgggatgtccagggttcaaacctcgacccgtgcatataa 28206598  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 25750349 - 25750414
Alignment:
Q  53 ttttaaggtgaataggtgagatgtccaaggttcaaacaacgacccctgcatataacaatacattgt 118  Q
    ||||||| |||||||||| | |||||| |||||||||  |||||  ||||||||||||| ||||||    
T  25750349 ttttaagatgaataggtggggtgtccacggttcaaactccgaccattgcatataacaatgcattgt 25750414  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 116
Target Start/End: Original strand, 37449493 - 37449580
Alignment:
Q  29 gtagtctaatgactataattcatcttttaaggtgaataggtgagatgtccaaggttcaaacaacgacccctgcatataacaatacatt 116  Q
    |||||||| || ||||||||||  |||||| ||||||| ||| ||||||||||||||||||  |||||||||||||||| ||| ||||    
T  37449493 gtagtctagtggctataattcactttttaaagtgaataagtgggatgtccaaggttcaaactccgacccctgcatataataatgcatt 37449580  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 119
Target Start/End: Original strand, 29658253 - 29658345
Alignment:
Q  27 aagtagtctaatgactataattcatcttttaaggtgaataggtgagatgtccaaggttcaaacaacgacccctgcatataacaatacattgtc 119  Q
    |||||| ||| || ||| |||||| ||| ||||||||||| ||| | |||||  ||||| |||  || ||||||||||||||||| |||||||    
T  29658253 aagtagcctagtggctagaattcaccttataaggtgaataagtggggtgtccggggttcgaaccccggcccctgcatataacaatgcattgtc 29658345  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 119
Target Start/End: Original strand, 49280668 - 49280742
Alignment:
Q  45 aattcatcttttaaggtgaataggtgagatgtccaaggttcaaacaacgacccctgcatataacaatacattgtc 119  Q
    |||||| ||| ||||||||||| ||||| |||||| |||||||||| |||||||||||||||| ||| |||||||    
T  49280668 aattcaccttataaggtgaataagtgaggtgtccagggttcaaacaccgacccctgcatataataattcattgtc 49280742  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 12820404 - 12820479
Alignment:
Q  45 aattcatcttttaaggtgaataggtgagatgtccaaggttcaaacaacgacccctgcatataacaatacattgtct 120  Q
    |||||| ||| ||||||||||| ||| | |||||| ||||| |||  |||||||||||||||||||| ||||||||    
T  12820404 aattcaccttataaggtgaataagtggggtgtccagggttctaaccccgacccctgcatataacaatgcattgtct 12820479  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 119
Target Start/End: Original strand, 35451104 - 35451194
Alignment:
Q  29 gtagtctaatgactataattcatcttttaaggtgaataggtgagatgtccaaggttcaaacaacgacccctgcatataacaatacattgtc 119  Q
    |||||||| || ||| |||||||||| ||||||||||| ||||| |||||   |||| |||  |||||||||||||||| ||| |||||||    
T  35451104 gtagtctagtggctagaattcatcttataaggtgaataagtgaggtgtccgtagttcgaactccgacccctgcatataataatgcattgtc 35451194  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 53685182 - 53685121
Alignment:
Q  45 aattcatcttttaaggtgaataggtgagatgtccaaggttcaaacaacgacccctgcatata 106  Q
    |||||||||||||||||||||| |||| |||| | |||||| |||  |||||||||||||||    
T  53685182 aattcatcttttaaggtgaataagtgaaatgttcgaggttcgaacttcgacccctgcatata 53685121  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 40082222 - 40082293
Alignment:
Q  45 aattcatcttttaaggtgaataggtgagatgtccaaggttcaaacaacgacccctgcatataacaatacatt 116  Q
    |||||| ||| ||||||||||| |||| ||||||| ||||| ||  || |||||||||||||| ||||||||    
T  40082222 aattcaccttataaggtgaatatgtgaaatgtccagggttcgaatcacaacccctgcatataataatacatt 40082293  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 119
Target Start/End: Complemental strand, 44976013 - 44975930
Alignment:
Q  36 aatgactataattcatcttttaaggtgaataggtgagatgtccaaggttcaaacaacgacccctgcatataacaatacattgtc 119  Q
    |||| ||| |||||||||| ||||||||||| ||| ||||||| || ||| |||  | ||||||||||| || |||||||||||    
T  44976013 aatggctagaattcatcttataaggtgaataagtgggatgtccgagattcgaaccccaacccctgcatacaataatacattgtc 44975930  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 119
Target Start/End: Complemental strand, 6365436 - 6365346
Alignment:
Q  29 gtagtctaatgactataattcatcttttaaggtgaataggtgagatgtccaaggttcaaacaacgacccctgcatataacaatacattgtc 119  Q
    |||| |||||| ||| |||| | ||| |||||||||||  ||||||||||| ||||  |||  |||||||||||||||| ||| |||||||    
T  6365436 gtagcctaatggctagaatttaccttataaggtgaataaatgagatgtccagggttataacttcgacccctgcatataataatgcattgtc 6365346  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 119
Target Start/End: Complemental strand, 32885784 - 32885710
Alignment:
Q  45 aattcatcttttaaggtgaataggtgagatgtccaaggttcaaacaacgacccctgcatataacaatacattgtc 119  Q
    |||||| ||| ||||||||||| ||| | ||||| |||||| |||  |||||||||||||||| ||| |||||||    
T  32885784 aattcaccttataaggtgaataagtggggtgtccgaggttcgaactccgacccctgcatataataatgcattgtc 32885710  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 31601917 - 31601829
Alignment:
Q  30 tagtctaatgactataattcatcttttaaggtgaataggtgagatgtccaaggttcaaacaacgacccctgcatataacaatacattgt 118  Q
    ||||| |||| ||| |||||||||| ||||||||||| ||| | |||||  ||||| ||   || ||||||||||||| ||||||||||    
T  31601917 tagtcaaatggctagaattcatcttataaggtgaataagtggggtgtccggggttcgaatctcggcccctgcatataataatacattgt 31601829  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 119
Target Start/End: Complemental strand, 9527538 - 9527448
Alignment:
Q  29 gtagtctaatgactataattcatcttttaaggtgaataggtgagatgtccaaggttcaaacaacgacccctgcatataacaatacattgtc 119  Q
    |||||||| || ||| |||||| ||| |||| |||||| ||| | |||||| |||||||||  |||||||||||||||||||| |||||||    
T  9527538 gtagtctagtggctagaattcaccttataagatgaataagtggggtgtccagggttcaaaccccgacccctgcatataacaatgcattgtc 9527448  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 119
Target Start/End: Complemental strand, 11405552 - 11405478
Alignment:
Q  45 aattcatcttttaaggtgaataggtgagatgtccaaggttcaaacaacgacccctgcatataacaatacattgtc 119  Q
    |||||| ||| ||||||||||| ||| | |||||  ||||| |||  |||||||||||||||||||| |||||||    
T  11405552 aattcaccttataaggtgaataagtggggtgtccggggttcgaaccccgacccctgcatataacaatgcattgtc 11405478  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 119
Target Start/End: Original strand, 33570410 - 33570502
Alignment:
Q  27 aagtagtctaatgactataattcatcttttaaggtgaataggtgagatgtccaaggttcaaacaacgacccctgcatataacaatacattgtc 119  Q
    ||||||| || || ||| |||||| ||| ||||||||||| ||| | ||||| |||||| |||  |||||| ||||||||||||| |||||||    
T  33570410 aagtagtttagtggctagaattcaccttataaggtgaataagtggggtgtccgaggttcgaaccccgacccatgcatataacaatgcattgtc 33570502  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 6064488 - 6064399
Alignment:
Q  30 tagtctaatgactataattcatcttttaaggtgaataggtgagatgtccaaggttcaaacaacgacccctgcatataacaatacattgtc 119  Q
    ||||||| || ||| |||||| ||| |||| |||||| ||||  ||||| |||||| |||  |||||||||||||||| ||| |||||||    
T  6064488 tagtctagtggctagaattcaccttataagctgaataagtgaagtgtccgaggttcgaaccccgacccctgcatataataatgcattgtc 6064399  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 10557468 - 10557529
Alignment:
Q  45 aattcatcttttaaggtgaataggtgagatgtccaaggttcaaacaacgacccctgcatata 106  Q
    |||||| ||||||||||| ||| ||| | ||||| |||||||||| ||| ||||||||||||    
T  10557468 aattcaacttttaaggtggataagtggggtgtccgaggttcaaaccacggcccctgcatata 10557529  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 13762496 - 13762585
Alignment:
Q  30 tagtctaatgactataattcatcttttaaggtgaataggtgagatgtccaaggttcaaacaacgacccctgcatataacaatacattgtc 119  Q
    ||||||||||| || |||| | ||| ||||||||||| ||| | |||||  ||||| ||||  ||||||||||||||| ||| |||||||    
T  13762496 tagtctaatgattagaatttaccttgtaaggtgaataagtggggtgtccgtggttcgaacactgacccctgcatataataatgcattgtc 13762585  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 118
Target Start/End: Complemental strand, 14683988 - 14683900
Alignment:
Q  29 gtagtctaatgactataattcatcttttaaggtgaataggtgagatgtccaaggttcaaacaacgacccctgcatataacaatacattgt 118  Q
    |||||||| |||||| |||||| ||| ||||||||||| ||| |||||||  ||||| |||  ||| |||||||||||| ||| ||||||    
T  14683988 gtagtctagtgactagaattcaccttataaggtgaataagtgggatgtccggggttcgaaccccga-ccctgcatataataatgcattgt 14683900  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 117
Target Start/End: Original strand, 13702351 - 13702423
Alignment:
Q  45 aattcatcttttaaggtgaataggtgagatgtccaaggttcaaacaacgacccctgcatataacaatacattg 117  Q
    |||||| ||| ||||||||||| ||||| ||||  |||||| |||  |||||||||||||||| ||| |||||    
T  13702351 aattcaccttataaggtgaataagtgaggtgtctgaggttcgaaccccgacccctgcatataataatgcattg 13702423  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 119
Target Start/End: Complemental strand, 14487675 - 14487583
Alignment:
Q  27 aagtagtctaatgactataattcatcttttaaggtgaataggtgagatgtccaaggttcaaacaacgacccctgcatataacaatacattgtc 119  Q
    ||||||||||||| ||| |||||| ||| ||||||||||| ||| ||| ||| |||||| |||  | |||||| ||||||| ||| |||||||    
T  14487675 aagtagtctaatggctagaattcaccttataaggtgaataagtgggatatccgaggttcgaaccccaacccctacatataataatgcattgtc 14487583  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 119
Target Start/End: Original strand, 9408949 - 9409023
Alignment:
Q  45 aattcatcttttaaggtgaataggtgagatgtccaaggttcaaacaacgacccctgcatataacaatacattgtc 119  Q
    |||||||||| |||| ||||||  |||| |||||  ||||| |||  |||||||||||||||||||| |||||||    
T  9408949 aattcatcttataagttgaataaatgaggtgtccggggttcgaactccgacccctgcatataacaatgcattgtc 9409023  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 119
Target Start/End: Complemental strand, 37304022 - 37303956
Alignment:
Q  53 ttttaaggtgaataggtgagatgtccaaggttcaaacaacgacccctgcatataacaatacattgtc 119  Q
    |||||| ||||||| ||| | |||||| ||||| |||  |||||||||||||||| |||||||||||    
T  37304022 ttttaaagtgaataagtggggtgtccagggttcgaaccccgacccctgcatataataatacattgtc 37303956  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 107
Target Start/End: Original strand, 16251506 - 16251584
Alignment:
Q  29 gtagtctaatgactataattcatcttttaaggtgaataggtgagatgtccaaggttcaaacaacgacccctgcatataa 107  Q
    |||| ||| |||||| |||||| ||| ||||||||||| ||| | |||||   |||| |||||||||||||||||||||    
T  16251506 gtagcctagtgactagaattcaccttataaggtgaataagtggggtgtccggagttcgaacaacgacccctgcatataa 16251584  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 119
Target Start/End: Complemental strand, 11133172 - 11133098
Alignment:
Q  45 aattcatcttttaaggtgaataggtgagatgtccaaggttcaaacaacgacccctgcatataacaatacattgtc 119  Q
    |||||| ||| ||||||||||| ||| | |||||  ||||| |||  |||||||||||||||||||| |||||||    
T  11133172 aattcaccttataaggtgaataagtggggtgtccggggttcgaaccccgacccctgcatataacaatgcattgtc 11133098  T

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