View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14706_low_30 (Length: 242)
Name: NF14706_low_30
Description: NF14706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14706_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 13468073 - 13467871
Alignment:
| Q |
20 |
gaatagacgtggcaatgaaggcccgctatgagaataggacctataactatgtggcatctactaccgaatatgaagcttagtctgttttagcacattgatc |
119 |
Q |
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| T |
13468073 |
gaatagacgtggcaatgaaggcccgctatgagaataggacctataactatgtggcatctactaccgaatatgaagcttagtctgttttggcacattgatc |
13467974 |
T |
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| Q |
120 |
tccacgtagatatgaactgactgatagggtttgaaaatagcaattgtcaagggacatacatgaacataggttaagtgactacttggattttgttgttttg |
219 |
Q |
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| T |
13467973 |
tccacataaatatgaactgactgatatggtttgaaaatagcaattgtcaagggacatacatgaacataggttaagtcactagttggattttgttgttttg |
13467874 |
T |
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| Q |
220 |
gat |
222 |
Q |
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||| |
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| T |
13467873 |
gat |
13467871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 169
Target Start/End: Complemental strand, 13472171 - 13472021
Alignment:
| Q |
20 |
gaatagacgtggcaatgaaggcccgctatgagaataggacctataactat-gtggcatctactaccgaatatgaagcttagtctgttttagcacattgat |
118 |
Q |
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||||||||| ||| |||||||| | ||||||||| ||||||||||||| || ||||||||||| ||| || || ||||||||||| |||||||||| |
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| T |
13472171 |
gaatagacgctgcagtgaaggccaacaatgagaataagacctataactattgtcgcatctactacttaatgtggagagtagtctgttttggcacattgat |
13472072 |
T |
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| Q |
119 |
ctccacgtagatatgaactgactgatagggtttgaaaatagcaattgtcaa |
169 |
Q |
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| T |
13472071 |
ctccacaaaaatttgaactgactgataggatttgaaaatagcaattgtcaa |
13472021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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