View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14706_low_40 (Length: 218)
Name: NF14706_low_40
Description: NF14706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14706_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 11858890 - 11858706
Alignment:
| Q |
18 |
caatggaaacgctttatctggtgattttccttacatgcaaacttcacttcagtttttgtatattaacaacaacaatttcacttccatgccaagtgatttc |
117 |
Q |
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| T |
11858890 |
caatggaaacgctttatctggtgattttccttacatgccaagttcacttcagtttttgtatattaacaacaacaatttcacttccatgccaagtgatttc |
11858791 |
T |
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| Q |
118 |
ttcaccaacatgagtaatttgatagaggtgagtattggttataaccctcttcctcagtggcaaattccttctagtcttaagaatt |
202 |
Q |
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| T |
11858790 |
ttcacaaacatgagtaatttgatagaggtgagtattggttataacccttttcctcagtggcaaattccttctagtcttaagaatt |
11858706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 11834874 - 11835058
Alignment:
| Q |
18 |
caatggaaacgctttatctggtgattttccttacatgcaaacttcacttcagtttttgtatattaacaacaacaatttcacttccatgccaagtgatttc |
117 |
Q |
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| T |
11834874 |
caatggaaacagtttatctggtgattttccttacatgccaatttcacttcagcatttgtctattggtaacaacaatttcgcttcgatgccgagtgatttc |
11834973 |
T |
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| Q |
118 |
ttcaccaacatgagtaatttgatagaggtgagtattggttataaccctcttcctcagtggcaaattccttctagtcttaagaatt |
202 |
Q |
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| T |
11834974 |
ttcgccaacatgagtaatttgattgatgtgagtattggttataacccttttcctcaatggcaaattccttctagtcttaagaatt |
11835058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 42 - 202
Target Start/End: Original strand, 11848284 - 11848444
Alignment:
| Q |
42 |
ttttccttacatgcaaacttcacttcagtttttgtatattaacaacaacaatttcacttccatgccaagtgatttcttcaccaacatgagtaatttgata |
141 |
Q |
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|||||| ||||||| || |||||||||| |||||||| | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
11848284 |
ttttccatacatgccaaattcacttcagaacttgtatatcagaaacaacagtttcacttccatgcctagtgatttcttcaccaacatgagtaatttgata |
11848383 |
T |
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| Q |
142 |
gaggtgagtattggttataaccctcttcctcagtggcaaattccttctagtcttaagaatt |
202 |
Q |
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| T |
11848384 |
gaggtggtaattgattctaaccctttttctcagtggcaaattccttctagtcttaagaatt |
11848444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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