View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14706_low_7 (Length: 412)
Name: NF14706_low_7
Description: NF14706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14706_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 15 - 393
Target Start/End: Complemental strand, 50653793 - 50653414
Alignment:
| Q |
15 |
aatataataagggatatgaatcctaaaagatgagatgtaattgtacannnnnnn-aagaaaagttgtactttaatattttttagacaacaatcaacctct |
113 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
50653793 |
aatataataagggatatgaatcctaaaagatgacatgtaattctacattttttttaagaaaagttgtactttaatattttt-agacaacaatcaacctct |
50653695 |
T |
|
| Q |
114 |
aataactttttcctaccc-tataaaatggcctagcacattatttctagctacaaattaacaatgacaaattttaagcctctaactctttgcttattcctt |
212 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50653694 |
aataactttttcctacccctataaaatggcctagcacattatttctagctacaaattaacaatgacaaattttaagcctctaactctttgcttattcctt |
50653595 |
T |
|
| Q |
213 |
caagctattgttatcataatttcattaccaacaatccaaagcagaagtactaatttcccttcaaaggatgaaaaactatcactcatagaaaacacttgcn |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50653594 |
caagctattgttatcataatttcattaccaacaatccaaagcagaagtactaatttcccttcaaaggatgaaaaactatcactcatagaaaacacttgca |
50653495 |
T |
|
| Q |
313 |
nnnnnncaccaaattacaatgtttgttttcagtctttgaaagcatattctggtacctctgctggtgatgtaacagggctag |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50653494 |
aaaaaacaccaaattacaatgtttgttttcagtctttgaaagcatattctggtacctctgctggtgatgtaacagggctag |
50653414 |
T |
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