View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14707_high_8 (Length: 227)

Name: NF14707_high_8
Description: NF14707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14707_high_8
NF14707_high_8
[»] chr8 (2 HSPs)
chr8 (1-218)||(27842715-27842932)
chr8 (92-171)||(40954080-40954158)
[»] chr4 (4 HSPs)
chr4 (108-171)||(18905611-18905674)
chr4 (87-160)||(54051148-54051221)
chr4 (108-164)||(2426200-2426256)
chr4 (110-158)||(42097266-42097314)
[»] chr5 (2 HSPs)
chr5 (92-159)||(12989701-12989768)
chr5 (92-159)||(13063322-13063389)
[»] chr7 (2 HSPs)
chr7 (51-131)||(24459310-24459390)
chr7 (56-145)||(5747998-5748087)
[»] chr6 (1 HSPs)
chr6 (108-145)||(3561803-3561840)
[»] chr2 (1 HSPs)
chr2 (92-164)||(10130868-10130940)


Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 27842932 - 27842715
Alignment:
Q  1 catccgagtcgctcgacgaacatttctactcaatattttctaccccctatgtctatgtggttgagtcaacgaatgatttggttcaactaacccttcaagc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27842932 catccgagtcgctcgacgaacatttctactcaatattttctaccccctgtgtctatgtggttgagtcaacaaatgatttggttcaactaacccttcaagc 27842833  T
Q  101 tagatagtgtgacatcaacctggaccctaaacatattaggttttctctcgttgtagtaaattgtggctaacacatcaattgataaaagtttatgtggctg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27842832 tagatagtgtgacatcaacctggaccctaaacatattaggttttctctcgttgtagtaaattgtggctaacacatcaattgataaaagtttatctggctg 27842733  T
Q  201 acaatatatataagataa 218  Q
    ||||||||||||||||||    
T  27842732 acaatatatataagataa 27842715  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 171
Target Start/End: Original strand, 40954080 - 40954158
Alignment:
Q  92 ccttcaagctagatagtgtgacatcaacctggaccctaaacatattaggttttct-ctcgttgtagtaaattgtggctaac 171  Q
    |||||||| |||||| ||||||||||||  ||||||||||| |||||  |||||| | ||||||||||||| || ||||||    
T  40954080 ccttcaagttagataatgtgacatcaacacggaccctaaacttatta--ttttctccccgttgtagtaaatagtagctaac 40954158  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 108 - 171
Target Start/End: Original strand, 18905611 - 18905674
Alignment:
Q  108 tgtgacatcaacctggaccctaaacatattaggttttctctcgttgtagtaaattgtggctaac 171  Q
    |||||||||||||| ||||||||||| ||| |||||||||||||||||||||| || |||||||    
T  18905611 tgtgacatcaacctagaccctaaacaaattgggttttctctcgttgtagtaaactgcggctaac 18905674  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 160
Target Start/End: Original strand, 54051148 - 54051221
Alignment:
Q  87 ctaacccttcaagctagatagtgtgacatcaacctggaccctaaacatattaggttttctctcgttgtagtaaa 160  Q
    |||| ||||||||||||| |  || || |||||||||||||  |||||||| ||||||| ||||||||||||||    
T  54051148 ctaatccttcaagctagacaacgttacctcaacctggacccggaacatatttggttttccctcgttgtagtaaa 54051221  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 2426200 - 2426256
Alignment:
Q  108 tgtgacatcaacctggaccctaaacatattaggttttctctcgttgtagtaaattgt 164  Q
    |||||||||||  || |||||||||| |||||||||||  ||||||||||| |||||    
T  2426200 tgtgacatcaatgtgaaccctaaacagattaggttttccttcgttgtagtacattgt 2426256  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 42097314 - 42097266
Alignment:
Q  110 tgacatcaacctggaccctaaacatattaggttttctctcgttgtagta 158  Q
    |||||||||| |||||| |||||| ||||||||||| || |||||||||    
T  42097314 tgacatcaacttggaccataaacaaattaggttttcccttgttgtagta 42097266  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 12989701 - 12989768
Alignment:
Q  92 ccttcaagctagatagtgtgacatcaacctggaccctaaacatattaggttttctctcgttgtagtaa 159  Q
    |||||||  ||||||||||||||||||| |||||||||||||||||||| |||  ||| |||||||||    
T  12989701 ccttcaaattagatagtgtgacatcaacgtggaccctaaacatattaggattttcctcattgtagtaa 12989768  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 13063322 - 13063389
Alignment:
Q  92 ccttcaagctagatagtgtgacatcaacctggaccctaaacatattaggttttctctcgttgtagtaa 159  Q
    |||||||  ||||||||||||||||||| |||||||||||||| |||| ||||  ||| |||||||||    
T  13063322 ccttcaaattagatagtgtgacatcaacgtggaccctaaacatcttagatttttcctcattgtagtaa 13063389  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 131
Target Start/End: Original strand, 24459310 - 24459390
Alignment:
Q  51 gtctatgtggttgagtcaacgaatgatttggttcaactaacccttcaagctagatagtgtgacatcaacctggaccctaaa 131  Q
    |||||||||||||||||||||| | ||||||||||||| | | ||||| ||||||||| | ||||| ||  ||||||||||    
T  24459310 gtctatgtggttgagtcaacgattaatttggttcaactgatctttcaacctagatagtataacatctactcggaccctaaa 24459390  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 145
Target Start/End: Complemental strand, 5748087 - 5747998
Alignment:
Q  56 tgtggttgagtcaacgaatgatttggttcaactaacccttcaagctagatagtgtgacatcaacctggaccctaaacatattaggttttc 145  Q
    ||||||||||||   || ||||||| | ||||||| ||||||| |||||||| ||||||||||   ||||||||| || |||||||||||    
T  5748087 tgtggttgagtcggggattgatttgatccaactaatccttcaacctagatagcgtgacatcaattcggaccctaagcagattaggttttc 5747998  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 145
Target Start/End: Original strand, 3561803 - 3561840
Alignment:
Q  108 tgtgacatcaacctggaccctaaacatattaggttttc 145  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  3561803 tgtgacatcaacctgaaccctaaacaaattaggttttc 3561840  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 164
Target Start/End: Complemental strand, 10130940 - 10130868
Alignment:
Q  92 ccttcaagctagatagtgtgacatcaacctggaccctaaacatattaggttttctctcgttgtagtaaattgt 164  Q
    ||||||| ||||||| ||| |||||||  ||||||||||||||||| | ||||||    ||||||||||||||    
T  10130940 ccttcaaactagataatgtaacatcaatatggaccctaaacatattggattttctgctattgtagtaaattgt 10130868  T

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