View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14707_low_13 (Length: 208)
Name: NF14707_low_13
Description: NF14707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14707_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 1137179 - 1137352
Alignment:
| Q |
17 |
gaactataagaatttttcacatagactagttaaagctaaaatatatgaatttttattgttcatgcagaaggtaaagtggggtgaaaatagcatgatagaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1137179 |
gaactataagaatttttcacatagactagttaaagctaaaatatatgaatttttattgttcatgcagaaggtaaagtggggtgaaaatagcatgatagaa |
1137278 |
T |
|
| Q |
117 |
gcagaaagacgtctactagcaaatgcactgcttgatttctcaaaccaacgttttgtactactttcagaacattg |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1137279 |
gcagaaagacgtctactagcaaatgcactgcttgatttctcaaaccaacgttttgtcctactttcagaacattg |
1137352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 1140638 - 1140813
Alignment:
| Q |
15 |
aagaactataagaatttttcacatagactagttaaagctaaaatatatgaatttttattgttcatgcagaaggtaaagtggggtgaaaatagcatgatag |
114 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1140638 |
aagaactataagattttttcacatagactagttaaagctaaaatatatgaatttttattgttcatgcaggaggtaaagtggggtgaaaatagcatgatag |
1140737 |
T |
|
| Q |
115 |
aagcagaaagacgtctactagcaaatgcactgcttgatttctcaaaccaacgttttgtactactttcagaacattg |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1140738 |
aagcagaaagacgtctactagcaaatgcactgcttgatttctcaaaccaacgttttgtactactttcagaacattg |
1140813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 48 - 185
Target Start/End: Complemental strand, 31266948 - 31266812
Alignment:
| Q |
48 |
aaagctaaaatatatgaatttttattgttcatgcagaaggtaaagtggggtgaaaatagcatgatagaagcagaaagacgtctactagcaaatgcactgc |
147 |
Q |
| |
|
||||| ||||| ||||| ||| | ||||| |||||| | |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
31266948 |
aaagccaaaatttatgattttcttttgtt-atgcaggaagtaaagtggggtgagaatagcatgatagaagcagaaagacgtttactagcaaatgcattgc |
31266850 |
T |
|
| Q |
148 |
ttgatttctcaaaccaacgttttgtactactttcagaa |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31266849 |
ttgatttctcaaaccaacgttttgtactactttcagaa |
31266812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 77 - 185
Target Start/End: Complemental strand, 54474869 - 54474761
Alignment:
| Q |
77 |
catgcagaaggtaaagtggggtgaaaatagcatgatagaagcagaaagacgtctactagcaaatgcactgcttgatttctcaaaccaacgttttgtacta |
176 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||| || || | ||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
54474869 |
catgcaggaggtaaagtggggtgagaatagcatgatagaggctgagaaacgtctactagcaaatgcattgctcgatttctcaaaccaacgttttgtacta |
54474770 |
T |
|
| Q |
177 |
ctttcagaa |
185 |
Q |
| |
|
||||||||| |
|
|
| T |
54474769 |
ctttcagaa |
54474761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 2e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 70 - 185
Target Start/End: Complemental strand, 48323731 - 48323616
Alignment:
| Q |
70 |
tattgttcatgcagaaggtaaagtggggtgaaaatagcatgatagaagcagaaagacgtctactagcaaatgcactgcttgatttctcaaaccaacgttt |
169 |
Q |
| |
|
||||||| |||||| |||||||||||||||| | |||||||||||| ||||| || |||||||||||||||||| |||||||||||||||||||| | || |
|
|
| T |
48323731 |
tattgttgatgcaggaggtaaagtggggtgagactagcatgatagaggcagagaggcgtctactagcaaatgcattgcttgatttctcaaaccaaagatt |
48323632 |
T |
|
| Q |
170 |
tgtactactttcagaa |
185 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
48323631 |
tgtactactttcagaa |
48323616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 395619 - 395573
Alignment:
| Q |
139 |
atgcactgcttgatttctcaaaccaacgttttgtactactttcagaa |
185 |
Q |
| |
|
||||||| |||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
395619 |
atgcactacttgatttatcaaaccaacgttttatactactttcagaa |
395573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University